View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_high_19 (Length: 249)
Name: NF3301_high_19
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 15234375 - 15234145
Alignment:
| Q |
16 |
gttcgaatcaacattctcgaagaagtaccatgaccatttgaaaacctttgcatcacaagcaaatgtgataattgtttccattgaatatagtcttgctcct |
115 |
Q |
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| T |
15234375 |
gttcgaatcaacattctcgaagaagtaccatgaacatttgaaaacctttgcatcacaagcaaatgtgataattgtttccattgaatatagtcttgctcct |
15234276 |
T |
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| Q |
116 |
gagtatcctctccctacatgttaccatgattgttgggctgcactcaaatggatatcttctcattccaataatgacatcaacaatccagaaccatggttga |
215 |
Q |
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| T |
15234275 |
gagtatcctctccctacatgttaccatgattgttgggctgcactcaaatggatatcttctcattccaataataacatcaacaatccagaaccatggttga |
15234176 |
T |
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| Q |
216 |
ttgaacatggtaattttaataaactcttcat |
246 |
Q |
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| T |
15234175 |
tcgaacatggtaattttaataaacttttcat |
15234145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 17473149 - 17473378
Alignment:
| Q |
17 |
ttcgaatcaacattctcgaagaagtaccatgaccatttgaaaacctttgcatcacaagcaaatgtgataattgtttccattgaatatagtcttgctcctg |
116 |
Q |
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| T |
17473149 |
ttcgaatccgcattctcaaagttgtaccatgaccatttgaaaatctttgcatcacaagcaaatgtgattgttgtttcaattgaatatagacttgctcctg |
17473248 |
T |
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| Q |
117 |
agtatcctctccctacatgttaccatgattgttgggctgcactcaaatggatatcttctcattccaat------aatga---catcaacaatccagaacc |
207 |
Q |
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| T |
17473249 |
agtatcctctccctacatgttaccatgattgttgggctgcactcaaatgggtatcttctcattccaatcataccaatgataccatcaacaatgcagaacc |
17473348 |
T |
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| Q |
208 |
atggttgattgaacatggtaattttaataa |
237 |
Q |
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| T |
17473349 |
atggttgattgaacatggtgattttgataa |
17473378 |
T |
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