View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_high_2 (Length: 498)
Name: NF3301_high_2
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 12 - 264
Target Start/End: Complemental strand, 3809712 - 3809460
Alignment:
| Q |
12 |
agagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacgtttccttccacagcgtgttttcttatgataag |
111 |
Q |
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| T |
3809712 |
agagatcgaaaggtagatcgttttgacaatggaacttgacgcattaactccaaatctaactgaacacatttccttccacatcgttttttcttatgataag |
3809613 |
T |
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| Q |
112 |
cattaccagtctccattacttgtttccatatacgaaaaatgatacttctatgaacatcgtatagtaaagctactcgtgatattacccctggactgtgtag |
211 |
Q |
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| T |
3809612 |
cattaccagtctccattacttgtttccatatacgataaatgatacttctatgaacatcgtatagtaaagctgctcgggatattacccctggactgtgtag |
3809513 |
T |
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| Q |
212 |
ttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
264 |
Q |
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| T |
3809512 |
ttttccatgtccgtcgctcaagctcaacaacaaatgagatatggcctttctat |
3809460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 267 - 498
Target Start/End: Complemental strand, 3809412 - 3809179
Alignment:
| Q |
267 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattaaagggaaaaaa-tatcgaaattcaattgatat |
365 |
Q |
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| T |
3809412 |
tcattcttcagaaaacgacgttttttggaagttccttcagttgtcaacgagtctgcatgacaagattatagggaaaaaaatatcgaaattcaattgatat |
3809313 |
T |
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| Q |
366 |
--atcaactaaaaatagcagggcacaaaaaagggaagaatatgtgtcattctactttaaacatgtacctgtagctatatggaattgttgaaagtcatttg |
463 |
Q |
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| T |
3809312 |
ttatcaactaaaaataacaag-cacaaaaaagggaagaatatgtgtcattctactttaaacatgtacatgtagctatatggaattgttgaaagtcatttg |
3809214 |
T |
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| Q |
464 |
cttcagggaatggcacatactgatcatcttcaact |
498 |
Q |
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| T |
3809213 |
ctttagggaatggcacatactgatcatcttcaact |
3809179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 3809456 - 3809421
Alignment:
| Q |
203 |
actgtgtagttttccatgtccgtcgctcaagctcaa |
238 |
Q |
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| T |
3809456 |
actgtgtagttttccatgtccatcgctcaagctcaa |
3809421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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