View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3301_high_23 (Length: 241)

Name: NF3301_high_23
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3301_high_23
NF3301_high_23
[»] chr8 (3 HSPs)
chr8 (1-222)||(37928633-37928841)
chr8 (36-222)||(31686793-31686978)
chr8 (133-174)||(33282457-33282498)
[»] chr1 (6 HSPs)
chr1 (97-221)||(36098987-36099111)
chr1 (97-182)||(33136516-33136601)
chr1 (97-162)||(34703907-34703972)
chr1 (118-170)||(25392741-25392793)
chr1 (117-170)||(31069277-31069330)
chr1 (118-170)||(22583607-22583659)
[»] chr3 (2 HSPs)
chr3 (94-192)||(20017817-20017915)
chr3 (97-172)||(18689941-18690016)
[»] chr5 (6 HSPs)
chr5 (97-210)||(27483048-27483161)
chr5 (97-167)||(18967462-18967532)
chr5 (97-174)||(12863901-12863978)
chr5 (97-170)||(14921157-14921230)
chr5 (97-174)||(12831926-12832003)
chr5 (130-222)||(25325766-25325858)
[»] chr6 (5 HSPs)
chr6 (94-176)||(32197228-32197310)
chr6 (133-178)||(2682407-2682452)
chr6 (97-177)||(12687796-12687876)
chr6 (97-177)||(27104882-27104962)
chr6 (97-177)||(27146691-27146771)
[»] chr2 (4 HSPs)
chr2 (94-176)||(24739423-24739505)
chr2 (97-173)||(129539-129615)
chr2 (97-169)||(841966-842038)
chr2 (100-174)||(30505327-30505401)
[»] chr4 (3 HSPs)
chr4 (97-174)||(20510002-20510079)
chr4 (97-172)||(5760609-5760684)
chr4 (118-174)||(22652917-22652973)
[»] scaffold0094 (1 HSPs)
scaffold0094 (99-173)||(25335-25409)
[»] chr7 (5 HSPs)
chr7 (100-174)||(26569317-26569390)
chr7 (130-176)||(30295508-30295554)
chr7 (97-170)||(10275088-10275161)
chr7 (97-174)||(41528995-41529072)
chr7 (118-170)||(12092307-12092359)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37928633 - 37928841
Alignment:
Q  1 atagaggatgtacctagtaatataagtgtgaatcatgcatataatttcctatcagttcatcctccacttgtttcatcggttcctgttgactcgttgtggc 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37928633 atagaggatgtacctagtaatataagtgtgaatcgtgcatataatttcctatcagttcatcctccacttgtttcatcggttcctgttgactcgttgtggc 37928732  T
Q  101 ataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcatggtgttcttgatcg 200  Q
    |||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37928733 ataaaga-------------gttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcgtggtgttcttgatcg 37928819  T
Q  201 tgactcaaggatgtgtgtggct 222  Q
    ||||||||||||||||||||||    
T  37928820 tgactcaaggatgtgtgtggct 37928841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 31686978 - 31686793
Alignment:
Q  36 tgcatataatttcctatcagttcatcctccacttgtttcatcggttcctgttgactcgttgtggcataaagatgtcccgttaaaggttgtgctttttgct 135  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||||||||  ||| |||||||||||||||||| ||||||||||||||| ||||||    
T  31686978 tgcatataatttcctatcagctcatcctccatttgtttcatcggttcctgttgcttcgatgtggcataaagatgtcctgttaaaggttgtgctgtttgct 31686879  T
Q  136 tggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcatggtgttcttgatcgtgactcaaggatgtgtgtggct 222  Q
    || |||||||||||||||| | ||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||    
T  31686878 tgacgtttgttccgagacaagctgcctac-aaggacaatttgcattggcgtggtgttcttgatcgtgacgcaaggatgtgtgtggct 31686793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 33282457 - 33282498
Alignment:
Q  133 gcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    |||||||| ||||| ||||||||||||||||| |||||||||    
T  33282457 gcttggcggttgtttcgagacaggttgcctacgaaggacaat 33282498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 221
Target Start/End: Complemental strand, 36099111 - 36098987
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcatggtgttcttg 196  Q
    |||||||| ||||||||  | ||||||||  | ||||||||||| || ||| |||||||||||||||||||||||||| |||| |  | |||||||||||    
T  36099111 tggcataaggatgtccctcttaaggttgttttgtttgcttggcggttattctgagacaggttgcctacaaaggacaatctgcaacatcgtggtgttcttg 36099012  T
Q  197 atcgtgactcaaggatgtgtgtggc 221  Q
     |||||| |||||| | ||||||||    
T  36099011 gtcgtgattcaaggttttgtgtggc 36098987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 33136601 - 33136516
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcg 182  Q
    |||||||| ||| | || || |||||||| || |||||||||||| ||||||| ||  |||||||||| |||||||||||| ||||    
T  33136601 tggcataaggatattccattgaaggttgttctctttgcttggcgtctgttccgtgattggttgcctactaaggacaatttgtatcg 33136516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 162
Target Start/End: Complemental strand, 34703972 - 34703907
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcct 162  Q
    |||||||||||||| || |||||||||||  | ||||||||||||||||||||  | |||||||||    
T  34703972 tggcataaagatgttcctttaaaggttgttttatttgcttggcgtttgttccggaataggttgcct 34703907  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 25392793 - 25392741
Alignment:
Q  118 aaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaagga 170  Q
    ||||||||| | ||||||||||| |||||||| || |||||||||||||||||    
T  25392793 aaggttgtgttgtttgcttggcggttgttccgggataggttgcctacaaagga 25392741  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 31069277 - 31069330
Alignment:
Q  117 aaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaagga 170  Q
    |||| ||||||||||||||||| || |||| ||||| |||||||| ||||||||    
T  31069277 aaagtttgtgctttttgcttggtgtctgtttcgagataggttgcccacaaagga 31069330  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 22583659 - 22583607
Alignment:
Q  118 aaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaagga 170  Q
    |||||||||||||||||||| ||| |||| ||||| ||||| | |||||||||    
T  22583659 aaggttgtgctttttgcttgacgtctgtttcgagataggtttcatacaaagga 22583607  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 20017915 - 20017817
Alignment:
Q  94 ttgtggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcatggtgtt 192  Q
    ||||||||||||||||| || || ||||||||||| |||| ||||||  ||||||| || ||||||||||| ||||||||| | ||||| | |||||||    
T  20017915 ttgtggcataaagatgttcctttgaaggttgtgctctttggttggcggctgttccgtgataggttgcctactaaggacaatcttcatcgtcgtggtgtt 20017817  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 18689941 - 18690016
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggaca 172  Q
    |||||||| ||||| ||  ||||||| ||||| |||| |||||| ||||| | ||||||||||||||| |||||||    
T  18689941 tggcataaggatgttcctctaaaggtggtgctatttgattggcggttgtttcaagacaggttgcctacgaaggaca 18690016  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 27483161 - 27483048
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcatggtgttcttg 196  Q
    |||||||||||||||||  | ||||||||  | || |||||||| || ||||| ||||||||||||||||| |||||  ||||||  | ||||||| |||    
T  27483161 tggcataaagatgtccctctgaaggttgttttgttcgcttggcggttattccgtgacaggttgcctacaaaagacaacctgcatcatcgtggtgttattg 27483062  T
Q  197 atcgtgactcaagg 210  Q
    |||| || ||||||    
T  27483061 atcgagattcaagg 27483048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 18967462 - 18967532
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaa 167  Q
    |||||||| ||| ||||  | |||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  18967462 tggcataaggatatccctatgaaggttgtgctttttgcttggcgtatgtttcgagataggttgccaacaaa 18967532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 12863978 - 12863901
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    |||||||| ||||| || |||||||||||  | |||||||||||||||||||| || || || ||||| |||||||||    
T  12863978 tggcataaggatgttcctttaaaggttgtcttgtttgcttggcgtttgttccgggatagattacctactaaggacaat 12863901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 14921230 - 14921157
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaagga 170  Q
    |||||||| ||||||||  |||||||||| ||||| ||||| |||||||| || ||||||||||| || |||||    
T  14921230 tggcataaggatgtccctctaaaggttgttcttttcgcttgacgtttgtttcgtgacaggttgccaactaagga 14921157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 12832003 - 12831926
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    |||||||| ||||| || |||||||||||  | ||||||||| |||||||||| || || || ||||| |||||||||    
T  12832003 tggcataaggatgttcctttaaaggttgtcttgtttgcttggtgtttgttccgggatagattacctactaaggacaat 12831926  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 25325766 - 25325858
Alignment:
Q  130 tttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttgcatcggcatggtgttcttgatcgtgactcaaggatgtgtgtggct 222  Q
    ||||||||||| |||||  |||||| |||||||||||| |||| ||||  ||  |  |||||| |||||| ||| || |||||||||||||||    
T  25325766 tttgcttggcggttgtttagagacaagttgcctacaaaagacattttgtttcatcgcggtgttattgatcatgattctaggatgtgtgtggct 25325858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 176
Target Start/End: Complemental strand, 32197310 - 32197228
Alignment:
Q  94 ttgtggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaattt 176  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||| | ||| || ||||| ||||| || |||||    
T  32197310 ttgtggcataaagatgttccgttgaaggttgtgctctttgcgtggcgcttgtttcaagatagattgcccacaaaagataattt 32197228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 2682407 - 2682452
Alignment:
Q  133 gcttggcgtttgttccgagacaggttgcctacaaaggacaatttgc 178  Q
    |||||||| || ||||||||||||||||| ||||| ||||||||||    
T  2682407 gcttggcggttattccgagacaggttgccaacaaaagacaatttgc 2682452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 12687796 - 12687876
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttg 177  Q
    |||||||| ||||| || |||||||| ||| | ||||||||||| ||| || |  |||| || ||||||||||||||||||    
T  12687796 tggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttgctcaggaacagattacctacaaaggacaatttg 12687876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 27104882 - 27104962
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttg 177  Q
    |||||||| ||||| || |||||||| ||| | ||||||||||| ||| ||||   ||| || ||||||||||||||||||    
T  27104882 tggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttgctccggagcagattacctacaaaggacaatttg 27104962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 177
Target Start/End: Original strand, 27146691 - 27146771
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaatttg 177  Q
    |||||||| ||||| || |||||||| ||| | ||||||||||| ||| ||||   ||| || ||||||||||||||||||    
T  27146691 tggcataaggatgttcctttaaaggtggtgttgtttgcttggcggttgctccggagcagattacctacaaaggacaatttg 27146771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 94 - 176
Target Start/End: Original strand, 24739423 - 24739505
Alignment:
Q  94 ttgtggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaattt 176  Q
    ||||||||||| |||||||| || ||||| ||||||||||| |||||||| || || ||  ||||||| || |||||||||||    
T  24739423 ttgtggcataaggatgtccccttgaaggtagtgctttttgcgtggcgtttatttcgtgatcggttgccaacgaaggacaattt 24739505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 129615 - 129539
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaa 173  Q
    |||||||| ||||| ||  | |||||||| || || ||||||||||||||||| ||||||||||| || ||||||||    
T  129615 tggcataaggatgttcctcttaaggttgttctcttagcttggcgtttgttccgtgacaggttgccaactaaggacaa 129539  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 842038 - 841966
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaagg 169  Q
    ||||||||||||||||| || ||||| ||||||||||| |||||| |||| || ||| || | ||||||||||    
T  842038 tggcataaagatgtccctttgaaggtggtgctttttgcgtggcgtctgtttcgtgaccggcttcctacaaagg 841966  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 30505327 - 30505401
Alignment:
Q  100 cataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    ||||| ||||||||  | ||||||||| | |||| |||| | |||||||| || |||||||||||||||||||||    
T  30505327 cataaggatgtccctctgaaggttgtgttgtttgtttggtggttgttccgggataggttgcctacaaaggacaat 30505401  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 20510002 - 20510079
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    |||||||| ||||| || |||||||||||  | |||||||||||||||||||| || || || ||||| |||||||||    
T  20510002 tggcataaggatgttcctttaaaggttgtcttgtttgcttggcgtttgttccgggatagattacctactaaggacaat 20510079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 5760609 - 5760684
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggaca 172  Q
    |||||||| ||||| ||  ||||||| ||||| |||| |||||| ||||| | ||||||||||||||| |||||||    
T  5760609 tggcataaggatgttcctctaaaggtggtgctatttgattggcggttgtttcaagacaggttgcctacgaaggaca 5760684  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 22652917 - 22652973
Alignment:
Q  118 aaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    ||||||||| | ||| ||||||| |||||| | || |||||||||||||||||||||    
T  22652917 aaggttgtgttgtttacttggcggttgttctgggataggttgcctacaaaggacaat 22652973  T

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Target: scaffold0094 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Complemental strand, 25409 - 25335
Alignment:
Q  99 gcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaa 173  Q
    |||||| ||||||||  | |||||||| ||||| |||||||||||||| || |||||| |||| || ||||||||    
T  25409 gcataaggatgtccctctgaaggttgttcttttcgcttggcgtttgtttcgtgacaggctgccaactaaggacaa 25335  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Original strand, 26569317 - 26569390
Alignment:
Q  100 cataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    ||||| ||||| ||||| ||| ||||||||||| ||||||||||||| || || ||| ||||||| |||||||||    
T  26569317 cataaggatgttccgttgaagattgtgcttttttcttggcgtttgtttcgggatagg-tgcctactaaggacaat 26569390  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 176
Target Start/End: Original strand, 30295508 - 30295554
Alignment:
Q  130 tttgcttggcgtttgttccgagacaggttgcctacaaaggacaattt 176  Q
    |||||||||||| |||| || || |||||||||||||||||||||||    
T  30295508 tttgcttggcgtatgtttcgggataggttgcctacaaaggacaattt 30295554  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 10275088 - 10275161
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaagga 170  Q
    ||||||||||||||||| || ||||||||| ||||| |||||||  |||||||  | |||| ||| ||||||||    
T  10275088 tggcataaagatgtccctttgaaggttgtgattttttcttggcggctgttccgtaataggtcgccaacaaagga 10275161  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 174
Target Start/End: Original strand, 41528995 - 41529072
Alignment:
Q  97 tggcataaagatgtcccgttaaaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaaggacaat 174  Q
    |||||||||||||| || |||||||||||  | |||||||||| || |||||| || || || ||||| |||||||||    
T  41528995 tggcataaagatgttcctttaaaggttgtcttgtttgcttggcattcgttccgggatagattacctactaaggacaat 41529072  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 12092307 - 12092359
Alignment:
Q  118 aaggttgtgctttttgcttggcgtttgttccgagacaggttgcctacaaagga 170  Q
    ||||| ||||||||||||||||| ||||| | |||  ||||||||||||||||    
T  12092307 aaggtcgtgctttttgcttggcgcttgtttcaagattggttgcctacaaagga 12092359  T

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