View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_high_4 (Length: 445)
Name: NF3301_high_4
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 432
Target Start/End: Original strand, 7095424 - 7095838
Alignment:
| Q |
18 |
agatccaaatctaatccacgggtttctttttaggtcactaatcaatccttcttctctgtgttttttgtttctttgtccccacatttccatacaacacccc |
117 |
Q |
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| T |
7095424 |
agatccaaatctaatccacgggtttctttttaggtcactaatcaatccttcttctctgtgttttttgtttctttgtccccacatttccatacaacacccc |
7095523 |
T |
|
| Q |
118 |
cttagttgcatgatattcagttagggacacttcttttcatcaaccaattttaagaatatgtgtgtggcttgaaagggaacttgaatccctcatctttttt |
217 |
Q |
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| T |
7095524 |
cttagctgcatgatattcagttagggacacttcttttcatcaaccaattttaagaatatgtgtgtggcttgaaagggaacttgaatccctcatctttttt |
7095623 |
T |
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| Q |
218 |
aaggatgtgattggagaaaataattttatagaggacctggtccttatgatgatttttagttagtttgtctttgataagagatttctagttggctaatgac |
317 |
Q |
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| T |
7095624 |
aaggatgtgattggagaaaataattttatagaggacctggtccttatgatgatttttagttagtttttctttgacaagagatttctagttggctaatgtc |
7095723 |
T |
|
| Q |
318 |
ttcttttttccgaggacatgtattaagtgattgtactttatgatttgggttggtctggtgatgtttgagcctttagagtatgtttcttttaagatctcag |
417 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7095724 |
ttcttttttccgaggacatgtattaagtgattgtgctttatgacttgggttgatctggtgatgtttgagcctttagagtgtgtttcttttaagatctcag |
7095823 |
T |
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| Q |
418 |
attcgattctctctg |
432 |
Q |
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| T |
7095824 |
attcgattctctctg |
7095838 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 398 - 430
Target Start/End: Complemental strand, 27198712 - 27198680
Alignment:
| Q |
398 |
tgtttcttttaagatctcagattcgattctctc |
430 |
Q |
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| T |
27198712 |
tgtttcttttaagatctcatattcgattctctc |
27198680 |
T |
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