View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_high_7 (Length: 343)
Name: NF3301_high_7
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 27991500 - 27991175
Alignment:
| Q |
6 |
accaataaaccctgtacctccagtcacacaaactcttccttttccctcttccattactagcttacctctctcttcttgcaaatatttccacagttcactt |
105 |
Q |
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| T |
27991500 |
accaataaaccctgtacctccagtcacacaaactcttccttttccctcttccattactagcttacctcactcttcttgcaaatatttccacacttcactt |
27991401 |
T |
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| Q |
106 |
ttacttttgttagttctgtatgaaggttgatggtcacattgaaatgtatatataaacatatctaatgttttttattgttggaaattaaatcaagctatca |
205 |
Q |
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| T |
27991400 |
ttacttttgttagttttgtatgaaggttgatggtcacattgaaatgtatatataaacatatctaatgttttttattgttggaaattaaatcaagctatca |
27991301 |
T |
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| Q |
206 |
gtggaagaattgacaagcacaagttgcttatggaccacatcaagtttgctgttttgtctaattaattagtctagacattaagaaattaaaggaaatgagt |
305 |
Q |
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| T |
27991300 |
gtggaagaattgacaagcacaagttacttatggaccacatcaagtttgttgttttgtctaattaattagtctagacatgaagaaattaaaggaaatgagt |
27991201 |
T |
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| Q |
306 |
ggactgtatgaatgctttcatgatga |
331 |
Q |
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| T |
27991200 |
ggactgtatgaatgctttcatgatga |
27991175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 27958098 - 27958043
Alignment:
| Q |
6 |
accaataaaccctgtacctccagtcacacaaactcttccttttccctcttccatta |
61 |
Q |
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| T |
27958098 |
accaataaaccctgtacctccagtcacacaaactcttcctttcccttcttccatta |
27958043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 28011785 - 28011727
Alignment:
| Q |
6 |
accaataaaccctgtacctccagtcacacaaactcttccttttccctcttccattacta |
64 |
Q |
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| T |
28011785 |
accaagaaaccctgtacctccagtcacacaaactcttcctttcccttcttccattacta |
28011727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 27983781 - 27983721
Alignment:
| Q |
168 |
taatgttttttattgttggaaattaaatcaagctatcagtggaagaattgacaagcacaag |
228 |
Q |
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| T |
27983781 |
taatgttgttgattgctggaaattaaagcaagctatcagtggaagaattgacaagcacaag |
27983721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 28002060 - 28002005
Alignment:
| Q |
6 |
accaataaaccctgtacctccagtcacacaaactcttccttttccctcttccatta |
61 |
Q |
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| T |
28002060 |
accaagaaaccctgtacctccagtcacacaaactcttcctttcccttcttccatta |
28002005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 327
Target Start/End: Complemental strand, 27983702 - 27983610
Alignment:
| Q |
225 |
caagttgcttatggaccacatcaagtttgctgttttgtctaattaattagtctagacattaagaaattaaaggaaatgagtggactgtatgaatgctttc |
324 |
Q |
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| T |
27983702 |
caagttgcttatggaccacatcaa-tttgttgttttgtc----taattagtctagagatcaag-----aaagaaaatgagtggaccgtatgaatgctttc |
27983613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 27943605 - 27943561
Alignment:
| Q |
6 |
accaataaaccctgtacctccagtcacacaaactcttccttttcc |
50 |
Q |
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| T |
27943605 |
accaagaaaacctgtacctccagtcacacaaactcttccttttcc |
27943561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 27983915 - 27983874
Alignment:
| Q |
6 |
accaataaaccctgtacctccagtcacacaaactcttccttt |
47 |
Q |
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| T |
27983915 |
accaataaacccagtacctccagttacacaaactcttccttt |
27983874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 145
Target Start/End: Complemental strand, 27983840 - 27983782
Alignment:
| Q |
87 |
atatttccacagttcacttttacttttgttagttctgtatgaaggttgatggtcacatt |
145 |
Q |
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| T |
27983840 |
atattttcacacttcacttttatttttgttgcttctgtatgaatgttgaaggtcacatt |
27983782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 144
Target Start/End: Complemental strand, 28001980 - 28001930
Alignment:
| Q |
94 |
cacagttcacttttacttttgttagttctgtatgaaggttgatggtcacat |
144 |
Q |
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| T |
28001980 |
cacacttcacttttatttttgttcgttctgtatgaatgttgattgtcacat |
28001930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 27958018 - 27957969
Alignment:
| Q |
94 |
cacagttcacttttacttttgttagttctgtatgaaggttgatggtcaca |
143 |
Q |
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| T |
27958018 |
cacacttcacttttatttttgttgcttctgtatgaatgttgatggtcaca |
27957969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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