View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_high_8 (Length: 334)
Name: NF3301_high_8
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_high_8 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 8705995 - 8706315
Alignment:
| Q |
13 |
gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaag |
112 |
Q |
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| T |
8705995 |
gagaaaaaagctgaaaaggaagctgaagcagatatacatgatgaaggggagccaagtagacacatgagttctgaccatgaaagtcaagaaatttttgaag |
8706094 |
T |
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| Q |
113 |
gaattcctgatgtaaggagttcatccttggtaaatgatgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaac |
212 |
Q |
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| T |
8706095 |
gaattcctgatgtaaggagttcatccttgataaatgat-atagaaattttgagaacaaagttttggatttaagcctttctacatgaaacatgctgagaac |
8706193 |
T |
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| Q |
213 |
ttatatttgttttataggtgagtgaaactttgccagaaataaatatggaatcaatatttcaggcacaggaagaaaatttatttcctttctcaccacaaca |
312 |
Q |
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| T |
8706194 |
ttatatttgttttataggtgagtgaaactttgccagaaataaatatggaatcaatatttcaggcacaggaagaaaatttctttcctttctcaccacaaca |
8706293 |
T |
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| Q |
313 |
gtcttcaatctctgaaaatgag |
334 |
Q |
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| T |
8706294 |
gtcttcaatctctgaaaatgag |
8706315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 51 - 192
Target Start/End: Original strand, 8691370 - 8691511
Alignment:
| Q |
51 |
tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat |
150 |
Q |
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| T |
8691370 |
tgatgaaggggagcctagtcgacacatgagttccgatcacgaaaatcaagaaacagttgaaggaattcctgatgtaaggatttcattcttgataaatgac |
8691469 |
T |
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| Q |
151 |
gatagaaattttgagaacaaagttttggatttaaacctttct |
192 |
Q |
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| T |
8691470 |
aatagaaattttgaaaacaaagttttaattttaaacctttct |
8691511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 8744652 - 8744817
Alignment:
| Q |
51 |
tgatgaaggggagccaagtagacacatgagttctgatcatgaaagtcaagaaatttttgaaggaattcctgatgtaaggagttcatccttggtaaatgat |
150 |
Q |
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| T |
8744652 |
tgatgtaggggagtcaagtagacacatgagctctcactacgaaaatcaagaaacattagaaggaatttcaaatgtaagaagttcatccttg--------- |
8744742 |
T |
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| Q |
151 |
gatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgtttta |
226 |
Q |
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| T |
8744743 |
-atagaaattttgaaaacaaagttttggctttacacaatttcacatgaaacatgctaagaacttatacttgtttta |
8744817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 8724900 - 8724978
Alignment:
| Q |
150 |
tgatagaaattttgagaacaaagttttggatttaaacctttctacatgagacatgctgagaacttatatttgttttata |
228 |
Q |
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| T |
8724900 |
tgatagaaattttcaaagccaagtcttggttttacacctttccacatgaaacatgctgagaacttatacttgttttata |
8724978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 8725001 - 8725033
Alignment:
| Q |
239 |
actttgccagaaataaatatggaatcaatattt |
271 |
Q |
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| T |
8725001 |
actttgccagaaataaatatgcaatcaatattt |
8725033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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