View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3301_high_9 (Length: 330)

Name: NF3301_high_9
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3301_high_9
NF3301_high_9
[»] chr4 (4 HSPs)
chr4 (271-313)||(23387723-23387765)
chr4 (271-330)||(13061065-13061124)
chr4 (271-330)||(37262999-37263058)
chr4 (271-303)||(24491371-24491403)
[»] chr8 (4 HSPs)
chr8 (271-330)||(4241441-4241500)
chr8 (272-303)||(19431316-19431347)
chr8 (272-303)||(19567465-19567496)
chr8 (272-330)||(19951057-19951115)
[»] chr5 (7 HSPs)
chr5 (271-330)||(558370-558429)
chr5 (271-330)||(26668878-26668937)
chr5 (271-330)||(26940475-26940534)
chr5 (271-330)||(39519986-39520045)
chr5 (271-330)||(41998316-41998375)
chr5 (271-313)||(36940625-36940667)
chr5 (274-313)||(36425255-36425294)
[»] chr3 (4 HSPs)
chr3 (271-330)||(3674240-3674299)
chr3 (271-330)||(23664557-23664616)
chr3 (271-330)||(8884844-8884903)
chr3 (271-330)||(18468813-18468872)
[»] chr2 (5 HSPs)
chr2 (271-330)||(17973786-17973845)
chr2 (271-330)||(25483205-25483264)
chr2 (271-330)||(25490811-25490870)
chr2 (271-330)||(30652515-30652574)
chr2 (271-330)||(9183853-9183912)
[»] chr1 (2 HSPs)
chr1 (271-330)||(10136926-10136985)
chr1 (271-330)||(25845357-25845416)
[»] chr6 (3 HSPs)
chr6 (272-330)||(16834598-16834656)
chr6 (271-330)||(12797206-12797265)
chr6 (272-309)||(19479413-19479450)
[»] scaffold0690 (1 HSPs)
scaffold0690 (271-330)||(6781-6840)
[»] scaffold0011 (1 HSPs)
scaffold0011 (272-303)||(2908-2939)
[»] chr7 (3 HSPs)
chr7 (271-312)||(10391530-10391571)
chr7 (271-303)||(7018015-7018047)
chr7 (271-303)||(7033373-7033405)


Alignment Details
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 23387723 - 23387765
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaata 313  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  23387723 gtgatggtaacccgacctaaatgattggagatctcaaaaaata 23387765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 13061124 - 13061065
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    |||||||||||||||||||||||| |||||||| ||| ||||| ||  ||||||||||||    
T  13061124 gtgatggtaacccgacctacatgactggagatcccaagaaataggttcgatgggtaataa 13061065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 37262999 - 37263058
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  37262999 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 37263058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 24491403 - 24491371
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatc 303  Q
    |||||||||||||||||||||||| ||||||||    
T  24491403 gtgatggtaacccgacctacatgactggagatc 24491371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 4241441 - 4241500
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  4241441 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 4241500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 19431347 - 19431316
Alignment:
Q  272 tgatggtaacccgacctacatgattggagatc 303  Q
    ||||||||||||||||||||||||||||||||    
T  19431347 tgatggtaacccgacctacatgattggagatc 19431316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 19567496 - 19567465
Alignment:
Q  272 tgatggtaacccgacctacatgattggagatc 303  Q
    ||||||||||||||||||||||||||||||||    
T  19567496 tgatggtaacccgacctacatgattggagatc 19567465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 19951115 - 19951057
Alignment:
Q  272 tgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    |||||||||||||||||| ||||||||||||| ||| ||||| ||   |||||||||||    
T  19951115 tgatggtaacccgacctaaatgattggagatcccaagaaataggttcaatgggtaataa 19951057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 558429 - 558370
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  558429 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 558370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 26668937 - 26668878
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  26668937 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 26668878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 26940534 - 26940475
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  26940534 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 26940475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 39520045 - 39519986
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  39520045 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 39519986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 41998375 - 41998316
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  41998375 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 41998316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 36940625 - 36940667
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaata 313  Q
    ||||||||||||||||||||||||||||||||| ||| |||||    
T  36940625 gtgatggtaacccgacctacatgattggagatcccaagaaata 36940667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 274 - 313
Target Start/End: Complemental strand, 36425294 - 36425255
Alignment:
Q  274 atggtaacccgacctacatgattggagatctcaaaaaata 313  Q
    |||||||||||||||||||||||||||||| ||| |||||    
T  36425294 atggtaacccgacctacatgattggagatcccaagaaata 36425255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 3674299 - 3674240
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  3674299 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 3674240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 23664557 - 23664616
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  23664557 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 23664616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 8884903 - 8884844
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    |||||||||||||||||||||||||| |||||| ||| ||||| ||   |||||||||||    
T  8884903 gtgatggtaacccgacctacatgattagagatcccaagaaataggttcaatgggtaataa 8884844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 18468872 - 18468813
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    |||||||||||| |||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  18468872 gtgatggtaacctgacctacatgattggagatcccaagaaataggttcaatgggtaataa 18468813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 17973786 - 17973845
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  17973786 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 17973845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 25483205 - 25483264
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  25483205 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 25483264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 25490811 - 25490870
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  25490811 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 25490870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 30652574 - 30652515
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  30652574 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 30652515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 9183853 - 9183912
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||| ||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  9183853 gtgatagtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 9183912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 10136985 - 10136926
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  10136985 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 10136926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 25845416 - 25845357
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    ||||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  25845416 gtgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 25845357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 16834598 - 16834656
Alignment:
Q  272 tgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    |||||||||||||||||||||||||||||||| ||| ||||| ||   |||||||||||    
T  16834598 tgatggtaacccgacctacatgattggagatcccaagaaataggttcaatgggtaataa 16834656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 12797206 - 12797265
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    |||||||||||||||||||||||| |||||||| |||||| ||| |   |||||||||||    
T  12797206 gtgatggtaacccgacctacatgactggagatcccaaaaagtatattcaatgggtaataa 12797265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Complemental strand, 19479450 - 19479413
Alignment:
Q  272 tgatggtaacccgacctacatgattggagatctcaaaa 309  Q
    ||||||||||||||||||||||||| |||||| |||||    
T  19479450 tgatggtaacccgacctacatgattcgagatcccaaaa 19479413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 6840 - 6781
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaatatgtgtgatgggtaataa 330  Q
    |||||||||||||||||||||||| |||||||| ||| ||||| ||   |||||||||||    
T  6840 gtgatggtaacccgacctacatgactggagatcccaagaaataagttcaatgggtaataa 6781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 2939 - 2908
Alignment:
Q  272 tgatggtaacccgacctacatgattggagatc 303  Q
    ||||||||||||||||||||||||||||||||    
T  2939 tgatggtaacccgacctacatgattggagatc 2908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 10391530 - 10391571
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatctcaaaaaat 312  Q
    |||||||||||||||||||| ||| |||||||| ||||||||    
T  10391530 gtgatggtaacccgacctacgtgactggagatcccaaaaaat 10391571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 7018015 - 7018047
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatc 303  Q
    |||||||||||||||||||||||| ||||||||    
T  7018015 gtgatggtaacccgacctacatgaatggagatc 7018047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 7033373 - 7033405
Alignment:
Q  271 gtgatggtaacccgacctacatgattggagatc 303  Q
    |||||||||||||||||||||||| ||||||||    
T  7033373 gtgatggtaacccgacctacatgaatggagatc 7033405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University