View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_low_12 (Length: 266)
Name: NF3301_low_12
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5593388 - 5593139
Alignment:
| Q |
1 |
ttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaact |
100 |
Q |
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| T |
5593388 |
ttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaact |
5593289 |
T |
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| Q |
101 |
ctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593288 |
ctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacat |
5593189 |
T |
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| Q |
201 |
tcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593188 |
tcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
5593139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5587152 - 5586906
Alignment:
| Q |
1 |
ttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaact |
100 |
Q |
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||||| |||| ||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||| ||||||||| | || |
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| T |
5587152 |
ttgcaacaatgtgtcaatgggaaatcccaagtgccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctac---ct |
5587056 |
T |
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| Q |
101 |
ctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacat |
200 |
Q |
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| T |
5587055 |
ctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacat |
5586956 |
T |
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| Q |
201 |
tcttttaacttatccatattatgaaacatgaagtgtttttctttgttctt |
250 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5586955 |
tcttttaacttaaccatattatgaaacatgaagtgtttttctttgttctt |
5586906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5576783 - 5576562
Alignment:
| Q |
1 |
ttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaact |
100 |
Q |
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||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | || |
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| T |
5576783 |
ttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattctttatctgatagtggaaacaataacaaccttcccac---ct |
5576687 |
T |
|
| Q |
101 |
ctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacat |
200 |
Q |
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|| ||| ||| |||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
5576686 |
ctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataataagtagcat |
5576587 |
T |
|
| Q |
201 |
t-cttttaacttatccatattatga |
224 |
Q |
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| | || |||||||| ||||||||| |
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| T |
5576586 |
tccgttcaacttatctatattatga |
5576562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 5573615 - 5573414
Alignment:
| Q |
7 |
caatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaa |
106 |
Q |
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|||| ||||||||||||||| ||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||| | |||| ||| |
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| T |
5573615 |
caatgtgtcaatgggaaatctcaagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataaccttcctac---ctctgcaa |
5573519 |
T |
|
| Q |
107 |
gatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattctttt |
206 |
Q |
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||| |||||||| ||||| || || ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
5573518 |
aatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacattctttc |
5573419 |
T |
|
| Q |
207 |
aactt |
211 |
Q |
| |
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||||| |
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| T |
5573418 |
aactt |
5573414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 5582896 - 5582835
Alignment:
| Q |
1 |
ttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattcttt |
62 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5582896 |
ttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattcttt |
5582835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
113 |
attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
205 |
Q |
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||||||| ||||| || || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
155 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat |
222 |
Q |
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| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 205
Target Start/End: Original strand, 12051887 - 12051943
Alignment:
| Q |
149 |
caaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
205 |
Q |
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| T |
12051887 |
caaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
165 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
225 |
Q |
| |
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||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
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| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 36358051 - 36357988
Alignment:
| Q |
26 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
89 |
Q |
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||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
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| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
36357988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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