View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_low_16 (Length: 251)
Name: NF3301_low_16
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 31241460 - 31241692
Alignment:
| Q |
19 |
cagaattgttgatagaataaaacattattaaggaaaataaataagcaatgnnnnnnntaaggataaatgacatacggattcacatttgtttcagcatcca |
118 |
Q |
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| T |
31241460 |
cagaattgttgatagaataaaatattattaaggaaaataaataagcaatgaaaaaaataaggataaatgacatatgggttcacatttgtttcagcatcca |
31241559 |
T |
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| Q |
119 |
cacaaatctcaagctcacgttgtaatgacttctactccctacttattttatcataggctattttgacgttttcatacatattaaaaaatatatttaattt |
218 |
Q |
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| T |
31241560 |
cacaaatctcaagctcacgttgtaatgacttctactccctacgtattttatcataggcgattttgacgttttcatacatattaagaaatatatttaattt |
31241659 |
T |
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| Q |
219 |
tctcctcaaaagaaatgtagttaattttgtatt |
251 |
Q |
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| T |
31241660 |
tcttctcaaaagaaatgtagttaattttgtatt |
31241692 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 1497218 - 1497291
Alignment:
| Q |
146 |
acttctactccctacttattttatcataggctattttgacgttttcatacatattaaaaaatatatttaatttt |
219 |
Q |
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| T |
1497218 |
acttttactccctccatattttattatagatcattttgatattttcacacatattaaaaaatatagttaatttt |
1497291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 10276470 - 10276502
Alignment:
| Q |
187 |
ttttcatacatattaaaaaatatatttaatttt |
219 |
Q |
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| T |
10276470 |
ttttcatacatattaaaaaatataattaatttt |
10276502 |
T |
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