View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_low_24 (Length: 237)
Name: NF3301_low_24
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 220
Target Start/End: Original strand, 36475482 - 36475680
Alignment:
| Q |
23 |
ttaaaaatatgtattaagaagttttatgctacaaattttttgatcggtcaattttcttagatatctcatccataaatttaaaacgagaaaaagtaataac |
122 |
Q |
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| T |
36475482 |
ttaaaaatatgtattaagaagttttatgctacaaattttttgatcggtcaattttcttagatatctcatccataaatttaaaacgagagaaagtaataac |
36475581 |
T |
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| Q |
123 |
aacgtaatacacatgataacacattcattttttggaaacgctcatcatcgtcac-aaatacatagattgttgcaaatttatacatgatttccactaatg |
220 |
Q |
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| T |
36475582 |
aacgtaatacacatgataacacattcattttttggaaacgctcatcatcgtcacaaaatacatagattgttgcaaatttatacatgatttccactaatg |
36475680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 36445271 - 36445336
Alignment:
| Q |
147 |
tcattttttggaaacgctcatcatcgtcacaaatacatagattgttgcaaatttatacatgatttc |
212 |
Q |
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| T |
36445271 |
tcattttttggaaaagcttatcatcattacaaatacatagtctgatgcaaatttatacatgatttc |
36445336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 36467740 - 36467805
Alignment:
| Q |
147 |
tcattttttggaaacgctcatcatcgtcacaaatacatagattgttgcaaatttatacatgatttc |
212 |
Q |
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| T |
36467740 |
tcattttttggaaaagcttatcatcattacaaatacatagtctgatgcaaatttatacatgatttc |
36467805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 216
Target Start/End: Original strand, 36492593 - 36492636
Alignment:
| Q |
173 |
tcacaaatacatagattgttgcaaatttatacatgatttccact |
216 |
Q |
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| T |
36492593 |
tcacagatacatagattgatgcaaatttatacatgattttcact |
36492636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 36435390 - 36435436
Alignment:
| Q |
166 |
atcatcgtcacaaatacatagattgttgcaaatttatacatgatttc |
212 |
Q |
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| T |
36435390 |
atcatcgttacaaatacatagtctgatgcaaatttatacatgatttc |
36435436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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