View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_low_3 (Length: 454)
Name: NF3301_low_3
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 8133869 - 8134316
Alignment:
| Q |
1 |
gcaggttcatcagaagagggacaagtaattggcgttcacaacgttgatgcatggaacgatatcctccataggggcaatgaatccaagaaactggtatatt |
100 |
Q |
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| T |
8133869 |
gcaggttcatcagaagagggacaagtaattggcgttcacaacgttgatgcatggaacgatatcctccataggggcaatgaatccaagaaactggtatatt |
8133968 |
T |
|
| Q |
101 |
attagtaccttttaattatacatcaaactattttttgtttattcttattttgccttcaaaatattgatcttaatttatggcttttatttgtgaacgtgac |
200 |
Q |
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| T |
8133969 |
attagtaccttttaattatacatcaaactattttttgtttattcttattttgccttcaaaatattgatcttaatttatggcttttatttgtgaacgtgac |
8134068 |
T |
|
| Q |
201 |
atgatta-nnnnnnnnnnnnnnnnnnngttacataatgcatctgttattgaaatattgatgtgaaaaagaatttctatggatttgattattgttggttat |
299 |
Q |
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| T |
8134069 |
atgattattttttttcctttttgttttgttacataatgcatctgttattgaaatattgatgtgaaaaagaatttctatggatttgattattgttggttat |
8134168 |
T |
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| Q |
300 |
tattctcatgcgatcatgattatgtacattattc-------nnnnnnnnnnnngttataaggtggtagttttaggtttatgaataattatgatgtgtata |
392 |
Q |
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||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8134169 |
tattctcatgcgatcatgattatatacattattcttttttgttttttttttttgttataaggtggtagttttaggtttatgaataattatgatgtgtata |
8134268 |
T |
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| Q |
393 |
attcttggacgtactgttgtgtgttgtgttttattataaattgatcgt |
440 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8134269 |
attcttggacgtactgttgtgtgttgtgttttattataaattgatcgt |
8134316 |
T |
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