View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3301_low_5 (Length: 424)
Name: NF3301_low_5
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 411
Target Start/End: Complemental strand, 37960700 - 37960305
Alignment:
| Q |
16 |
aaaagcagaggagggtgatagcaaaagtgatgaaggtgattgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960700 |
aaaagcagaggagggtgatagcaaaagtgatgaaggtgattgtgttgatcttgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggt |
37960601 |
T |
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| Q |
116 |
gaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37960600 |
gaattgtcattaccaaaaacttattttggaaattgtcttgcatcttataccgtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcgg |
37960501 |
T |
|
| Q |
216 |
cttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctgg |
315 |
Q |
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| T |
37960500 |
cttcaattggtatcgaaaagaagataagacatttaaagagtcatgctttgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctgg |
37960401 |
T |
|
| Q |
316 |
taagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaaatctgatgcagttcatct |
411 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
37960400 |
taagtctgtaactgtggttgctggttcaccgaaattggctgtttatgagacagattttgggtgggggaagcctaagaaatctgatgctgttcatct |
37960305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 294 - 411
Target Start/End: Complemental strand, 37954613 - 37954496
Alignment:
| Q |
294 |
atagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaagaa |
393 |
Q |
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| T |
37954613 |
atagggaaatgtcaaaacctggtaagtctgttaatgtgattgctggttcaccgaatttggctgtttatgagacagattttggatgggggaagcctaagaa |
37954514 |
T |
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| Q |
394 |
atctgatgcagttcatct |
411 |
Q |
| |
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|||||||||||||||||| |
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| T |
37954513 |
atctgatgcagttcatct |
37954496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 405
Target Start/End: Original strand, 37907422 - 37907731
Alignment:
| Q |
93 |
ttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatgagttaat |
192 |
Q |
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|||||||||||||||| | |||||| |||||| | ||| ||||||||||||||||| |||| ||||||| |||| |||||| || | ||||||| | |
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| T |
37907422 |
ttgcagattgtcgtgaccgttctgaattttcattagctaaatcttattttggaaattgtgttgcctcttataacgtggttgtaaaaaggggtgagttagt |
37907521 |
T |
|
| Q |
193 |
tggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatgtctgat |
292 |
Q |
| |
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|| |||| |||| |||||| | || || || |||| |||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||| ||||| |
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| T |
37907522 |
tgaaaaagatggtattgttgcagc---aaatgctatttaaaagaagataagagattttaagagtgatgctttgttagaagctgaaacgttgatacctgat |
37907618 |
T |
|
| Q |
293 |
tatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagcctaaga |
392 |
Q |
| |
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|||| |||| | | |||||||||||| || || ||||||||||| ||||| ||| | | ||||| ||| || |||||||||||||| || || |||| |
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| T |
37907619 |
tatatggaattattaaaacctggtaactcatttgtagtggttgctgggtcacctaaacttgatgtttgtgagactgattttgggtggggaaaaccaaaga |
37907718 |
T |
|
| Q |
393 |
aatctgatgcagt |
405 |
Q |
| |
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||||||||||||| |
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| T |
37907719 |
aatctgatgcagt |
37907731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 401
Target Start/End: Original strand, 37915566 - 37915880
Alignment:
| Q |
87 |
tgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatactgtggctgtaaagagagatga |
186 |
Q |
| |
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||||| ||||||||||||||||| | ||||||| |||||| | ||||||||||||||||| |||||||| ||||||||||| | |||||| || | ||| |
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| T |
37915566 |
tgttttttgcagattgtcgtgatcgtcgtgaattttcattatcgaaaacttattttggaaactgtcttgcttcttatactgtagttgtaaataggggtga |
37915665 |
T |
|
| Q |
187 |
gttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagagtcatgctttgttaggagctgaaacattgatg |
286 |
Q |
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|||| |||||||| |||| ||| || ||| ||| || ||||||| |||||||||| |||| |||||| |||| ||||| |||| |||||| |||||| |
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| T |
37915666 |
gttagttggaaaagatggtattcttgtggcggcaaatgctattgaacggaagataagagatttcaagagtgatgccttgttgggagttgaaacgttgatg |
37915765 |
T |
|
| Q |
287 |
tctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatgatacagattttgggtgggggaagc |
386 |
Q |
| |
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|||||||||||||||| |||||| ||||| ||| | | ||||| |||| || || ||| | | ||||||||| || |||||||||||||| || | |
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| T |
37915766 |
cctgattatagggaaataataaaaccaggtaactctgttaaaatggtttctgggtcgcctaaacttgatgtttatgagactgattttgggtggggaaaac |
37915865 |
T |
|
| Q |
387 |
ctaagaaatctgatg |
401 |
Q |
| |
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| |||||||| |||| |
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| T |
37915866 |
caaagaaatccgatg |
37915880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 67 - 411
Target Start/End: Original strand, 3783688 - 3784035
Alignment:
| Q |
67 |
tgatgatcactgctactttgtgtttcttgcagattgtcgtgatagcggtgaattgtcattaccaaaaacttattttggaaattgtcttgcatcttatact |
166 |
Q |
| |
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|||||||| |||||||| || |||| |||||||||||||||||| |||| | |||||||| |||| ||||||||||||||||||||| | | | | |
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| T |
3783688 |
tgatgatctatgctacttggtatttcatgcagattgtcgtgatagtcctgaaatttcattacccaaaaattattttggaaattgtcttgccagtaaaatt |
3783787 |
T |
|
| Q |
167 |
gtggctgtaaagagagatgagttaattggaaaaaatgggattgtttcggcttcaattggtattgaaaagaagataagacattttaagag---tcatgctt |
263 |
Q |
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|||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| ||| |||||| |||| |||||||||| |||| ||||| | |||||| |
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| T |
3783788 |
gtggttgtaaagagggctgagttagttggaacaaatgggattgttgcggctgcaaatggtatcgaaaggaagataagagatttcaagagtgataatgctt |
3783887 |
T |
|
| Q |
264 |
tgttaggagctgaaacattgatgtctgattatagggaaatgtcaaaacctggtaagtctttaactgtggttgctggttcaccgaaattggctgtttatga |
363 |
Q |
| |
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||||||| || || | || |||||| |||| ||| | |||||||||||||||||| | | ||||||| ||||| ||||| | ||||||||| |
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| T |
3783888 |
tgttaggtcctaaatggtggacttctgatcatagtgaattatcaaaacctggtaagtctgttgtaggaattgctggctcacctaaatttgatgtttatga |
3783987 |
T |
|
| Q |
364 |
tacagattttgggtgggggaagcctaagaaatctgatgcagttcatct |
411 |
Q |
| |
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|| || || ||||||||||||||||| |||||||||||||||||||| |
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| T |
3783988 |
gactgacttcgggtgggggaagcctaaaaaatctgatgcagttcatct |
3784035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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