View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3301_low_6 (Length: 380)
Name: NF3301_low_6
Description: NF3301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3301_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 30698177 - 30698528
Alignment:
| Q |
13 |
gaacagcttatcattcggtaacaaatcagaaaccaaagagtaatctatccctatgctttcaaaaaagacttcaaattcgttaatagggtggaacctaata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30698177 |
gaacagcttatcattcggtaacaaatcagaaaccaaagtgtaatctatccctatgctttcaaaaaagacttcaaattcgttaatagggtggaacctaatg |
30698276 |
T |
|
| Q |
113 |
actcttttaatgttatttgagaaagtgggtggtgaaaaatttacctttgaaatgagatttgtgagggaacagaaagtattgttgccaatgtgttctgcat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30698277 |
actcttttaatgttatttgagaaagtgggtggtgaaaaatttacctttgaaatgagatttgtgagggaacagaaagtattgttgccaatgtgttctgcat |
30698376 |
T |
|
| Q |
213 |
aggtgaagggtatggatttggtgttgtggaggtaatcggtaagagctttttgagcttcgtaaatgacatggtttctgtgtttgatggggattttggagag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30698377 |
aggtgaagggtatggatttggtgttgtggaggtaatcggtaagagctttttgagcttcgtaaatgacatggtttctgtgtttgatggggattttggagag |
30698476 |
T |
|
| Q |
313 |
gtttgggaagttggtttttgtggtggtggagaaatggcggtggaggaagaag |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30698477 |
gtttgggaagttggtttttgtggtggtggagaaatggcggtggaggaagaag |
30698528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University