View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3302_high_8 (Length: 249)
Name: NF3302_high_8
Description: NF3302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3302_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 54863383 - 54863626
Alignment:
| Q |
1 |
taatacggacttatgaatatctatcaggtgtagagataaaagagtgattctgttaaaaaggtaaaatcgaaatgatagtagataataagtgtttgagtgg |
100 |
Q |
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| T |
54863383 |
taatgcggacttatgaatgtctatcaggtgtagagacaaaagagtgattatgttaaaagggtaaaatcgaaatgatagtagataataagtgcttgagtgg |
54863482 |
T |
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| Q |
101 |
atcttagatattttattgaaccttttgttataatagggctaaggatag-----tttattttatttaagtctcactatatatattaataacatttgtattc |
195 |
Q |
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| T |
54863483 |
gtgtcagatattttattgaaccttttgttataatagggctaaggatagtttattttattttatttaagtctcactatatatattaataacatttgtattc |
54863582 |
T |
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| Q |
196 |
ttaaacctttgtcaattttattgttttgttctctcttttctctg |
239 |
Q |
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| T |
54863583 |
ttaaacctttgtcaattttattgttttgttctctctttcctctg |
54863626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 20014321 - 20014213
Alignment:
| Q |
122 |
cttttgttataatagggctaaggatagtttattttatttaagtctcactatatatattaataacatttgtattcttaaacctttgtcaattttattgttt |
221 |
Q |
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||||||||||||| ||| ||| | ||||||| |||||||| | ||||||||||| || ||| |||| |||||||||| || ||||| ||| |||||| |
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| T |
20014321 |
cttttgttataattgggttaatggtagtttaatttatttatatttcactatatat--tagtaatatttatattcttaaattttggtcaactttgttgttt |
20014224 |
T |
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| Q |
222 |
tgttctctctt |
232 |
Q |
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| T |
20014223 |
tgttctctctt |
20014213 |
T |
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