View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3302_low_10 (Length: 227)
Name: NF3302_low_10
Description: NF3302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3302_low_10 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 26403273 - 26403498
Alignment:
| Q |
1 |
tcatcaacaacaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtgatagtgt |
100 |
Q |
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| T |
26403273 |
tcatcaacaacaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaacagcatcaatggtggtagtgcaactacaagtgatagtgt |
26403372 |
T |
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| Q |
101 |
tggtgaccaagcaatacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgtgagcaatataacagtatgttggcaagtaaa |
200 |
Q |
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| T |
26403373 |
tg-tgaccaagcaacacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgtgagcaacataacagtatgttggcaagttaa |
26403471 |
T |
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| Q |
201 |
aaagcatagagaatcacaatttttaat |
227 |
Q |
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| T |
26403472 |
aaagcatagagaatcacaatttttaat |
26403498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 176
Target Start/End: Original strand, 26395415 - 26395520
Alignment:
| Q |
71 |
tggtggtagtgcaactacaagtgatagtgttggtgaccaagcaatacaaaaaatggatcctaagatgctcaaactgtatacttatgttacttatagttgt |
170 |
Q |
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| T |
26395415 |
tggtggtagtgcatctgcaaatgttggtgttggtgatcaagcaacacaaaatttggatccaaagaggctcaaacggtatacttgtgtaacttatatttgt |
26395514 |
T |
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| Q |
171 |
gagcaa |
176 |
Q |
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| T |
26395515 |
gagcaa |
26395520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 10 - 94
Target Start/End: Original strand, 26402493 - 26402577
Alignment:
| Q |
10 |
acaacaataacatgaatatagagaaatcaaatcttggtcatgttaagaagaaccgcatcaatggtggtagtgcaactacaagtga |
94 |
Q |
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| T |
26402493 |
acaacaataacttaaatatagaaaaatcaaatcttggttatattgagaagaaccacatgaatggtggtagagcaactacaggtga |
26402577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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