View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3302_low_4 (Length: 427)
Name: NF3302_low_4
Description: NF3302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3302_low_4 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 427
Target Start/End: Complemental strand, 43797495 - 43797098
Alignment:
| Q |
15 |
gtttttacttcttcctttgctaatttatagacaacatgtataacttaaaaacccaagaaaacaaatacgtgcatgcatgattaacaattgtctcattgaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43797495 |
gtttttacttcttcctttgctaatttatagacaacatgtataacttaaaaacccaagaaaacaaatacgtgcatgcatgattaacaattgtctcattgaa |
43797396 |
T |
|
| Q |
115 |
aaccttactcaaattaaagaataccaaagataaaaagtgggacaagaaaaacgaaagttacaaagactaaactcataaggaatcaatgaaacatatactc |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43797395 |
aaccttactc-----aaagaataccaaagataaaaagttggacaagaaaaacgaaagttacaaagactaaactcataaggaatcaatgaaacatatactc |
43797301 |
T |
|
| Q |
215 |
aagaagaccaaaggataatcctgttaaaaacctcgatgaataatacttactctatttcttaagaaatcatcacgggtaaaatttagaataaggtaaaaga |
314 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43797300 |
aagaagaccaaaggataatcctgtt----------atgaataatacttactctatttcttaagaaatcatcacgggtaaaatttagaataaggtaaaaga |
43797211 |
T |
|
| Q |
315 |
agctaattacatgcacagaacataaattttaagcatctaaataaaacatcaacaactgaacaaatgtaaaaattaatatagattataatgtaataaaaag |
414 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43797210 |
agctaattacatgcacagaacagaaattttaagcatctaaataaaacatcaacaactgaacaaatgtaaaaattaatatagattataatgtaataaaaag |
43797111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 272
Target Start/End: Complemental strand, 43798447 - 43798345
Alignment:
| Q |
174 |
acaaagactaaactcataaggaa-tcaatgaaacatatactcaagaagaccaaaggataatcctg----ttaaaaacctcgatgaataatacttactcta |
268 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| ||||||||| |||||| |||||||||| |||| || ||||| |
|
|
| T |
43798447 |
acaaagactaaactcataaggaaatcaatgaaacatgtactcaagaagacc-aagcataatcctgttaattaaaagcctcgatgaaaaatagttgctcta |
43798349 |
T |
|
| Q |
269 |
tttc |
272 |
Q |
| |
|
|||| |
|
|
| T |
43798348 |
tttc |
43798345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University