View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3302_low_6 (Length: 363)
Name: NF3302_low_6
Description: NF3302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3302_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 43673572 - 43673223
Alignment:
| Q |
1 |
tttttattggtatttctggtttgattttttgtccatgttgtgtgaggatataaaaagcctagaaggttaataaatgtgcaagcagaattaatggaaaaaa |
100 |
Q |
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| T |
43673572 |
tttttattggtatttctggtttgattttttgtccatgttgtgtgaggatataaaaagcctagaaggttaagaaatgtgcaagcagaattaatggaaaaaa |
43673473 |
T |
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| Q |
101 |
gaaatgttattttcaatgattataatatttgtgtatatgaatagaaagaacaatgaatttcagatcatggcgaacatttaaagactgctgaaagaatgtg |
200 |
Q |
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| T |
43673472 |
gaaatgttattttcaatgattataatatttgtgtatatgaatagaaagaacaatgaatttcagatcatggcgaacatttaaagactgctgaaagaatgtg |
43673373 |
T |
|
| Q |
201 |
aattaagttccttcttctcaggatctcgtctttaatcttttcatgtcattttcgttttgtataatttctacttatatgtctataaaaatcttatcattta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43673372 |
aattaagttccttcttctcaggatctcgtctttaatcttttcatgtcattttcgttttgtataatttctacttatatgtctataaaaatcttatcattta |
43673273 |
T |
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| Q |
301 |
gcataaagtgttggattctatgatagtttatttatatacatattcttctt |
350 |
Q |
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| T |
43673272 |
gcataaagtgttggattctatgatagtttatttatatacatattcttctt |
43673223 |
T |
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