View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3302_low_7 (Length: 254)
Name: NF3302_low_7
Description: NF3302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3302_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 31337264 - 31337021
Alignment:
| Q |
1 |
actcatgagctagctgttaaaaatatatagatataatttgtgtatgtgtaacattat---atggtttgttatatattatttcaagaaaaattaattaagc |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| |
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| T |
31337264 |
actcatgagctagctgttaaaaatatatagatataatttgtgtatgtgtaacattattatatggtttgttatatattattttaaaaaaaattaattaagc |
31337165 |
T |
|
| Q |
98 |
attgagatgtccaagtataaattatgaccagaaacgataatgactctaaattatgtgtttctgttgcaaaactatatttatatttacttgttgtgtgctt |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31337164 |
attgagatgtccaagtataaattatgaccagaaacgataatgactctaaattatgtgtttctgttgcaaaactctatttatatttacttgttgtgtgctt |
31337065 |
T |
|
| Q |
198 |
gcataagaataagtataataatgcgcttgtatgttgttgtaact |
241 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31337064 |
gcataagaataagtataataatgcgcttgtatgttgttgtaact |
31337021 |
T |
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