View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3303_high_1 (Length: 488)

Name: NF3303_high_1
Description: NF3303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3303_high_1
NF3303_high_1
[»] chr5 (8 HSPs)
chr5 (1-380)||(12546735-12547107)
chr5 (1-147)||(12531512-12531658)
chr5 (114-308)||(12537076-12537266)
chr5 (1-142)||(9866624-9866765)
chr5 (5-143)||(9894667-9894804)
chr5 (3-102)||(9870003-9870102)
chr5 (56-143)||(12538673-12538760)
chr5 (18-83)||(38735554-38735619)
[»] chr2 (5 HSPs)
chr2 (1-142)||(13576368-13576509)
chr2 (4-114)||(34571441-34571551)
chr2 (4-107)||(34562654-34562757)
chr2 (19-78)||(34578945-34579004)
chr2 (19-78)||(34584694-34584753)
[»] chr7 (4 HSPs)
chr7 (1-139)||(3929931-3930069)
chr7 (1-107)||(21317594-21317700)
chr7 (1-139)||(3928579-3928717)
chr7 (93-137)||(21320195-21320239)
[»] chr8 (8 HSPs)
chr8 (1-138)||(43479645-43479782)
chr8 (7-104)||(26592194-26592291)
chr8 (4-113)||(25865723-25865832)
chr8 (1-138)||(38799515-38799652)
chr8 (1-138)||(38821865-38822002)
chr8 (31-138)||(38807046-38807153)
chr8 (4-107)||(41943967-41944070)
chr8 (4-104)||(44343978-44344078)
[»] chr4 (4 HSPs)
chr4 (1-137)||(24860566-24860702)
chr4 (7-111)||(34748781-34748885)
chr4 (1-83)||(53290756-53290838)
chr4 (7-98)||(40036062-40036153)
[»] scaffold0197 (1 HSPs)
scaffold0197 (1-107)||(31031-31137)
[»] chr1 (1 HSPs)
chr1 (4-113)||(7594127-7594236)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 12547107 - 12546735
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12547107 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 12547008  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttagatttggttactgtgcttcttgatctataatataggtgttggttgtatttcttagttagggtt 200  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||||       || ||||| |   | ||  || || ||||  |||||||||||  ||    
T  12547007 ttcaacttgctcgcagaattagaggcgagagagcttagatttggtta-------tcatgatccaagttcta-ctggtgcttgtggttcttagttagtttt 12546916  T
Q  201 atgtttagtttcaatgtcaaataaaattagggtttggtttatgattttgatgttgttttta-tattctgtattgaaggttaacctatggttatcttgtaa 299  Q
    | ||||| ||||  |||| || |||| |||||||  | || || || || |||| ||| || | || |||  |||||||||||| ||||||||||||| |    
T  12546915 aggtttaatttctctgtctaacaaaaatagggttcagattctggttatgttgttttttatatttttatgttgtgaaggttaacccatggttatcttgtga 12546816  T
Q  300 caatgctcttttctactgtttcttaattgaattgaatatcattttcctaagatctttgttaataattgtcaattttatttg 380  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  12546815 caatgctctgttctactgtttcttaattgaattgaatatcattttcctatgttctttgttaataattgtcaattttatttg 12546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 12531512 - 12531658
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12531512 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 12531611  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttagatttggtta 147  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  12531612 ttcaactcgctcgcagaatcagaggcgagagggcttagatttggtta 12531658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 114 - 308
Target Start/End: Original strand, 12537076 - 12537266
Alignment:
Q  114 cagaatcagaggcgagagggcttagatttggttactgtgcttcttgatctataatataggtgttggttgtatttcttagttagggttatgtttagtttca 213  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||     ||||||||||||||||  ||||||||||||| ||||||||||||||    
T  12537076 cagaatcagaggcgagagggcttagatttggttacggtgcttcaagatc-----tataggtgttggttgtggttcttagttagggctatgtttagtttca 12537170  T
Q  214 atgtcaaat-aaaattagggtttggtttatgattttgatgttgtttttatattctgtattgaaggttaacctatggttatcttgtaacaatgctct 308  Q
     |||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| |||| |||||||||| |||||||| ||||||||||||    
T  12537171 ctgtcaaataaaaattagggtttggtttatgattttgatgtagttttaatattctgtaatgaaagttaacctattgttatcttttaacaatgctct 12537266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 9866765 - 9866624
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    |||||||||||||||||| |||  |||||||||||||||||||| |||||||| || ||||| |||||||||||||| |||||||| |||||| |||| |    
T  9866765 gctcttcaagaagctgctaaagactatcttgttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgaggaca 9866666  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttagattt 142  Q
    | |||||||||   |||||||||||| |||||||||||||||    
T  9866665 tccaactcgcttaaagaatcagaggccagagggcttagattt 9866624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 9894667 - 9894804
Alignment:
Q  5 ttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 104  Q
    ||||||||| || |||||||| | ||||| |||||||||| ||||||||| | || || |||||||||||| | |||||||| ||| | ||||||||| |    
T  9894667 ttcaagaagttgttgaagcttgttttgttagtttgtttgaagatactaatatttgcgctattcatgctaagtgagttactattatggc-aaggatattga 9894765  T
Q  105 actcgctcgcagaatcagaggcgagagggcttagatttg 143  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  9894766 acttgctcgcagaatcagaggcgagagggcttagatttg 9894804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 102
Target Start/End: Original strand, 9870003 - 9870102
Alignment:
Q  3 tcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatatt 102  Q
    |||||||||||||| |||||||||| |||||||||||||| | |||| |||||| || || |||||||||||||| |||||||| |||||||||||||||    
T  9870003 tcttcaagaagctgttgaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 56 - 143
Target Start/End: Original strand, 12538673 - 12538760
Alignment:
Q  56 tctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgagagggcttagatttg 143  Q
    ||||||| |||||||||||||| ||||||||||||||||| | |||||||||| |||||| |||||||||| |||| |||||||||||    
T  12538673 tctgtgctattcatgctaagagagttactatcatgcctaaaggtattcaactcactcgcataatcagaggcaagagtgcttagatttg 12538760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 38735554 - 38735619
Alignment:
Q  18 tgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttac 83  Q
    ||||| ||||||||||||||||||||| |||||||| || ||| | ||||||||||||||||||||    
T  38735554 tgaagtttatcttgttggtttgtttgaagatactaacctttgtactattcatgctaagagggttac 38735619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 106; Significance: 8e-53; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 13576368 - 13576509
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||    
T  13576368 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggata 13576467  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttagattt 142  Q
    ||||||| ||  | |||||||||||||| |||||||||||||    
T  13576468 ttcaacttgcgagaagaatcagaggcgaaagggcttagattt 13576509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 34571551 - 34571441
Alignment:
Q  4 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 103  Q
    ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||||||||| || ||||||||||||||||    
T  34571551 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 34571452  T
Q  104 aactcgctcgc 114  Q
    |||| ||||||    
T  34571451 aacttgctcgc 34571441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 4 - 107
Target Start/End: Complemental strand, 34562757 - 34562654
Alignment:
Q  4 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 103  Q
    ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||||||||| || ||||||||||||||||    
T  34562757 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 34562658  T
Q  104 aact 107  Q
    ||||    
T  34562657 aact 34562654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34579004 - 34578945
Alignment:
Q  19 gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagg 78  Q
    ||||||||| | |||||||||||||||||||| ||| | ||||| |||||||||||||||    
T  34579004 gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagg 34578945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Complemental strand, 34584753 - 34584694
Alignment:
Q  19 gaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagg 78  Q
    ||||||||| | |||||||||||||||||||| ||| | ||||| |||||||||||||||    
T  34584753 gaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagg 34584694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 3930069 - 3929931
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||| ||||| |||||||    
T  3930069 gctcttcaagaagctgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggata 3929970  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttaga 139  Q
    ||||||| ||  | |||||||||||||| ||||||||||    
T  3929969 ttcaacttgcaagaagaatcagaggcgaaagggcttaga 3929931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 21317594 - 21317700
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||| |||||||||||||    
T  21317594 gctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggata 21317693  T
Q  101 ttcaact 107  Q
    |||||||    
T  21317694 ttcaact 21317700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 3928717 - 3928579
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    ||||||||||||   |||||||| | | |||||||||||||||| ||||  ||||| ||||| |||||||||||||| ||||||||  ||||||||||||    
T  3928717 gctcttcaagaaatcgctgaagcgtgtattgttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggata 3928618  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttaga 139  Q
    || |||| ||  ||||||||||  ||||||| |||||||    
T  3928617 ttaaacttgcatgcagaatcaggtgcgagagagcttaga 3928579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 21320195 - 21320239
Alignment:
Q  93 taaggatattcaactcgctcgcagaatcagaggcgagagggctta 137  Q
    ||||||||||||||| ||| ||| ||||||||| |||||||||||    
T  21320195 taaggatattcaacttgcttgcataatcagaggtgagagggctta 21320239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 7e-41; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 43479782 - 43479645
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || |||||||||||||||||||| || |||||||||||||    
T  43479782 gctcttcaagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggata 43479683  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttag 138  Q
    ||||||| ||  | ||||| ||||||||||||||||||    
T  43479682 ttcaacttgcaagaagaattagaggcgagagggcttag 43479645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 26592194 - 26592291
Alignment:
Q  7 caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattca 104  Q
    |||||||| || || |||||||||||||| ||||||||||||||||| ||||| || |||||||||||| | ||||||||||||||||||||||||||    
T  26592194 caagaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattca 26592291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 25865723 - 25865832
Alignment:
Q  4 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 103  Q
    ||||| ||||||||||| ||||||||||| || |||||||||||||||||| | ||||| ||||||||||||||||| || || ||||| ||||||||||    
T  25865723 cttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaagagggtaacgattatgccaaaggatattc 25865822  T
Q  104 aactcgctcg 113  Q
    | || |||||    
T  25865823 agcttgctcg 25865832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 38799515 - 38799652
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    ||||||||||||||||||||||||||  | |||||| | ||||| || || || || ||||| |||||||||||||| ||||| |||||||||||||| |    
T  38799515 gctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggaca 38799614  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttag 138  Q
    |||| || ||  | ||||||||||| ||||||||||||    
T  38799615 ttcagcttgcaagaagaatcagaggagagagggcttag 38799652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 38822002 - 38821865
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    ||||||||||||||||||||||||||  | |||||| | ||||| || || || || ||||| |||||||||||||| ||||| |||||||||||||| |    
T  38822002 gctcttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggaca 38821903  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggcttag 138  Q
    |||| || ||  | ||||||||||| ||||||||||||    
T  38821902 ttcagcttgcaagaagaatcagaggagagagggcttag 38821865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 38807046 - 38807153
Alignment:
Q  31 gttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaactcgctcgcagaatcagaggcgaga 130  Q
    |||||| | |||||||| || ||||  || || |||||||||||||| |||||||||||||||||||| |||||||| ||  | ||||||||||||||||    
T  38807046 gttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgcaagaagaatcagaggcgaga 38807145  T
Q  131 gggcttag 138  Q
    ||||||||    
T  38807146 gggcttag 38807153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 41943967 - 41944070
Alignment:
Q  4 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 103  Q
    ||||| ||||| || ||||||||||| ||||| |||||||||||||| ||| | ||||| |||||||||||||||||||| || ||||| ||||| ||||    
T  41943967 cttcaggaagcagcagaagcttatctggttggattgtttgaggataccaatttgtgtgcaattcatgctaagagggttacaattatgccaaaggacattc 41944066  T
Q  104 aact 107  Q
    ||||    
T  41944067 aact 41944070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 104
Target Start/End: Original strand, 44343978 - 44344078
Alignment:
Q  4 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 103  Q
    ||||| ||||| ||||| |||||||| || || |||||||||||||| ||| | ||||| ||||||||||||||||| || || ||||| ||||||||||    
T  44343978 cttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatattc 44344077  T
Q  104 a 104  Q
    |    
T  44344078 a 44344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 24860566 - 24860702
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    ||||||||||||||||||||||||||||| |||||  | ||||| ||||| ||||| || || |||||||||||||| ||||| || ||||| |||||||    
T  24860566 gctcttcaagaagctgctgaagcttatctcgttggactctttgaagatacaaatctttgcgctattcatgctaagagagttaccattatgcccaaggata 24860665  T
Q  101 ttcaactcgctcgcagaatcagaggcgagagggctta 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  24860666 ttcaactcgctcgcagaatcagaggcgagagggctta 24860702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 34748781 - 34748885
Alignment:
Q  7 caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattcaac 106  Q
    |||||||| ||||| |||||||| |||||| | |||||||||||||| ||||||||||||||||| ||| | || |||||||||||||||||||| || |    
T  34748781 caagaagcggctgaggcttatctcgttggtctctttgaggatactaacctctgtgccattcatgccaagcgtgtcactatcatgcctaaggatatccagc 34748880  T
Q  107 tcgct 111  Q
    |||||    
T  34748881 tcgct 34748885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 53290756 - 53290838
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttac 83  Q
    ||||||||| |||  | ||||||||||||||||||||||||||| |||||||| || ||| ||||||||||||||||| ||||    
T  53290756 gctcttcaaaaagtcgttgaagcttatcttgttggtttgtttgaagatactaacctttgtaccattcatgctaagaggattac 53290838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 98
Target Start/End: Original strand, 40036062 - 40036153
Alignment:
Q  7 caagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaagga 98  Q
    ||||| ||||||||||| |||||||||||| | |||||||| |||||  | ||||| || ||||| ||| | |||||||| ||||| |||||    
T  40036062 caagaggctgctgaagcatatcttgttggtctctttgaggacactaacttgtgtgctatccatgccaagcgagttactattatgcccaagga 40036153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 31031 - 31137
Alignment:
Q  1 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||||| |||||||||||||    
T  31031 gctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaagagagttactattatgcctaaggata 31130  T
Q  101 ttcaact 107  Q
    |||||||    
T  31131 ttcaact 31137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 113
Target Start/End: Complemental strand, 7594236 - 7594127
Alignment:
Q  4 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 103  Q
    ||||| ||||| ||||| ||||| || ||||| ||||||||||| || ||||| ||||| ||||||||||||||||| || || ||||| ||||||||||    
T  7594236 cttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaagagggtgacaattatgccaaaggatattc 7594137  T
Q  104 aactcgctcg 113  Q
    | || |||||    
T  7594136 agcttgctcg 7594127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University