View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3304_high_10 (Length: 324)
Name: NF3304_high_10
Description: NF3304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3304_high_10 |
 | |
|
| [»] scaffold0299 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 19781293 - 19781600
Alignment:
| Q |
1 |
acaagcttaaatgatgggatcacaacaatagtgccatcattgttacctgaaatcgagagatatatcattagcttgataatctacgagaaataaaaaatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19781293 |
acaagcttaaatgatgggatcacaacaatagtgccatcattgttacctgaaatcgagagatatatcattagcttgataatttacgagaaataaaaaatag |
19781392 |
T |
|
| Q |
101 |
acggataatacaaactctcagtataatactaagaagttacaccactttttatnnnnnnnnttacttgttttggttgcttaaccaatgcctcaggagcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19781393 |
acggataatacaaactctcagtataatactaagaagttacaccactttttat-aaaaaaattacttgttttggttgcttaaccaatgccccaggagcact |
19781491 |
T |
|
| Q |
201 |
gtttaacattctcctactaagaatattaacaattgtcacttaaattttttacctgaaatcaatagtgacccatcatcactaagatggagactcgaaacag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19781492 |
gtttaacattctcctactaagaatattaacaattgttacttaaattttttacctgaaatcaatagtgacccatcatcactaagatggagactcgaaacag |
19781591 |
T |
|
| Q |
301 |
gtttcgagt |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
19781592 |
gtttcgagt |
19781600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 8435080 - 8435025
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctccta |
216 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| |||| | |||||||||||||| |
|
|
| T |
8435080 |
ttacttattttggatgcttaaccaatgcctcaggggcactggttaacattctccta |
8435025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 6830291 - 6830262
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcct |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
6830291 |
ttacttgttttggttgcttaaccaatgcct |
6830262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 7609630 - 7609685
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcctcaggagcaccgtttaacattctcctac |
217 |
Q |
| |
|
|||||| ||||||| |||||||||||||| | ||||||| | ||||||||||||||| |
|
|
| T |
7609630 |
ttacttcttttggt-gcttaaccaatgccccgggagcactggttaacattctcctac |
7609685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0299 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0299
Description:
Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 18107 - 18135
Alignment:
| Q |
161 |
ttacttgttttggttgcttaaccaatgcc |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18107 |
ttacttgttttggttgcttaaccaatgcc |
18135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University