View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3304_high_12 (Length: 322)
Name: NF3304_high_12
Description: NF3304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3304_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 47011028 - 47011336
Alignment:
| Q |
1 |
tcaaatcacaatattcaataacagaattattaaacattcactaactactcnnnnnnnnnnnnntaaccatatcaaagatgagcaaatcacccattcacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||||| |
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| T |
47011028 |
tcaaatcacaatattcaataacagaattattaaacattcactaactactcaaa-----------aaaaataaaaaaaatgagcaaatcacccattcacct |
47011116 |
T |
|
| Q |
101 |
cctgaatttgtaggggtcggaaatttatacccctgaaatttgcagatacgcnnnnnnnnnnntc---cagaaactacttttgtttgattgtaagctagtt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||| |
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| T |
47011117 |
cctgaatttgtaggggtcggaaatttatacccctgaaatttgcagatatgcaaaaaaaaaaaaaaaacaggaactacttttgtttgattgtaagctagtt |
47011216 |
T |
|
| Q |
198 |
tgaaaataagtgaaataactcggagactaattttttagtaagtgactaattttccagaatataaattagatacaagttaacagaaggaccaagttgctcg |
297 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
47011217 |
tgaaaataagtgaaataactcggagactaattttgtagtaagtgactaattttccagaatataaattagatacatgttaacagaaggaccaagttgttcg |
47011316 |
T |
|
| Q |
298 |
acataaatgtctgtggtgct |
317 |
Q |
| |
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||| ||||||| ||| |||| |
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| T |
47011317 |
acaaaaatgtcagtgatgct |
47011336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 299
Target Start/End: Original strand, 24133681 - 24133720
Alignment:
| Q |
260 |
aaattagatacaagttaacagaaggaccaagttgctcgac |
299 |
Q |
| |
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| T |
24133681 |
aaattagatacaagttaatagaaggaccaatttgctcgac |
24133720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 41688549 - 41688593
Alignment:
| Q |
259 |
taaattagatacaagttaacagaaggaccaagttgctcgacataa |
303 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
41688549 |
taaattagatacaagttaatagaagaaccaagttgctcgacataa |
41688593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 44008431 - 44008390
Alignment:
| Q |
258 |
ataaattagatacaagttaacagaaggaccaagttgctcgac |
299 |
Q |
| |
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||||| ||||| ||||||||||||| |||||||||||||||| |
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| T |
44008431 |
ataaactagattcaagttaacagaaagaccaagttgctcgac |
44008390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 54064674 - 54064718
Alignment:
| Q |
259 |
taaattagatacaagttaacagaaggaccaagttgctcgacataa |
303 |
Q |
| |
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|||||||||||||||||| |||||||||||| ||||| |||||| |
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|
| T |
54064674 |
taaattagatacaagttattagaaggaccaagctgctccacataa |
54064718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 296
Target Start/End: Complemental strand, 3437716 - 3437679
Alignment:
| Q |
259 |
taaattagatacaagttaacagaaggaccaagttgctc |
296 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |
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|
| T |
3437716 |
taaattagatacaagttaacagaaaaaccaagttgctc |
3437679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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