View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3304_high_17 (Length: 307)
Name: NF3304_high_17
Description: NF3304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3304_high_17 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 23 - 307
Target Start/End: Complemental strand, 5663378 - 5663094
Alignment:
| Q |
23 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacataaagatgaagaa |
122 |
Q |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaaagatgaagaa |
5663279 |
T |
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| Q |
123 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttg |
222 |
Q |
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| T |
5663278 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagctaatgtgtctttaacttcttg |
5663179 |
T |
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| Q |
223 |
tgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaa |
307 |
Q |
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| T |
5663178 |
tgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccataaacaatgaattcaatcttgctaa |
5663094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 127 - 307
Target Start/End: Complemental strand, 52131508 - 52131333
Alignment:
| Q |
127 |
taaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtgaagcta-atgtgtctttaacttcttgtga |
225 |
Q |
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| T |
52131508 |
taaaccaaggcagcagaacataact----tctcgtgagtacc-aaattgacaggaaatggaggataacgtgacgctacatgt-tctttgacttcttgtga |
52131415 |
T |
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| Q |
226 |
gaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaa |
307 |
Q |
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| T |
52131414 |
gaagcgaccatggtcttaccgatgacagaagcttcgaaatcggattgagatacaccgtcaataataaattcaatcttgctaa |
52131333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 11649155 - 11649240
Alignment:
| Q |
222 |
gtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcggagcgagatacaccgtaaacaatgaattcaatcttgctaa |
307 |
Q |
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| T |
11649155 |
gtgagaagcgaccatggtcttaccgatgacagaagcttcgaagtcggagcgagatacaccgtcaacaatgaattcaatcttgctaa |
11649240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 174 - 302
Target Start/End: Complemental strand, 22007875 - 22007743
Alignment:
| Q |
174 |
tgacaggaaatggaggagaat----gtgaagcta-atgtgtctttaacttcttgtgagaagcgaccatggtcttaccggtgacagaagcttcgaagtcgg |
268 |
Q |
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||||||||||||||||||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||| || ||||||||| || ||||||| |
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| T |
22007875 |
tgacaggaaatggaggagaatcaacgtgaagctacatgt-tctttaacttcttgtgaaaagcgaccatggtcttgacgatgacagaagttttgaagtcga |
22007777 |
T |
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| Q |
269 |
agcgagatacaccgtaaacaatgaattcaatctt |
302 |
Q |
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| T |
22007776 |
agcgagatacaccgccaacaatgaattcagtctt |
22007743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 11649122 - 11649159
Alignment:
| Q |
127 |
taaaccaaggcagcagaacataactactggctcgtgag |
164 |
Q |
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| T |
11649122 |
taaaccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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