View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3304_high_3 (Length: 355)
Name: NF3304_high_3
Description: NF3304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3304_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 5 - 343
Target Start/End: Complemental strand, 28916948 - 28916613
Alignment:
| Q |
5 |
tgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacg |
104 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916948 |
tgacttggaaccgtatgaaagaggtgagggggaagat---accggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacg |
28916852 |
T |
|
| Q |
105 |
tcaagagttaaaccagtaaagagaaagaagaataaggttaaatcaataaatgggaaagtagcaaaagataagaaaaaggattttgttggatggggttcaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
28916851 |
tcaagagttaaaccagtaaagagaaagaagaataaggttaaatcaataaatgggaaagtaacaaaagataagaaaaaggattttgttggatggggttcaa |
28916752 |
T |
|
| Q |
205 |
gaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatcatccataagtactgccnnnnnnn |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28916751 |
gaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatcatccataagtactgccaaaaaaa |
28916652 |
T |
|
| Q |
305 |
ccagctttttgaccccaacaaaaagaagatggtaatctg |
343 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||| |
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| T |
28916651 |
ccagctttttgaccccaagaaaaagaagatggtaatctg |
28916613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 334
Target Start/End: Complemental strand, 28926183 - 28925848
Alignment:
| Q |
5 |
tgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacg |
104 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||| ||||| ||||||| || |||||||||| ||||||| ||||||||| | || ||| |
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| T |
28926183 |
tgacttggatccgtatgaaataggtgagggggaagatgatactggtgattctgatgtgagcaactttataggatctgattgtgacgacttcgatgaaacg |
28926084 |
T |
|
| Q |
105 |
tcaagagttaaaccagtaaagagaaagaag------aataaggttaaatcaataaatgggaaagtagcaaaagataagaaaaaggattttgttggatggg |
198 |
Q |
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|||||||||||| |||| |||||||||||| || ||| | ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
28926083 |
tcaagagttaaatcagtgaagagaaagaagtgtacgaaaaagctcaaatcaataaaagggaaagtagcgaaagataagaaaaaggattttgtaggatggg |
28925984 |
T |
|
| Q |
199 |
gttcaagaagtctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatcatccataagtactgccn |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| || || | ||||||| |
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| T |
28925983 |
gttcaagaagtctcatagattttcttaaaaatattggtagagacacgaccaaagctttttccgaaattgaagttgcttcgatcgtcaatgattactgcca |
28925884 |
T |
|
| Q |
299 |
nnnnnnccagctttttgaccccaacaaaaagaagat |
334 |
Q |
| |
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| T |
28925883 |
caaacaccagctttttgaccccaagaaaaagaagat |
28925848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 28892581 - 28892245
Alignment:
| Q |
18 |
tatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacgtcaagagttaaac |
117 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| ||||||| ||| |||| |||| |||||||| ||| ||| ||| || ||| || |||||||| |
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| T |
28892581 |
tatgaaataggtgagggggaagatgataccggtgagtctgatgtcagtaacttcatagattctgattatgatgacctggatgatacggcaggagttaaat |
28892482 |
T |
|
| Q |
118 |
cagtaaagagaaagaagaat---------aaggttaaatcaataaatgggaaagtagcaaaagataagaaaaaggattttgttggatggggttcaagaag |
208 |
Q |
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| || | ||||||||||||| ||| | |||| | ||||| ||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
28892481 |
cggtgaggagaaagaagaattgcataaaaaagctcaaattattaaatcaaaaagtagagaaagacaagaaaaaagattttgttggatggggttcaagaag |
28892382 |
T |
|
| Q |
209 |
tctcatagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatcatccataagtactgccnnnnnnnccag |
308 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||| |
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| T |
28892381 |
tctcgtagattttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcaatcatcagtaagtactgccacaaaaaccag |
28892282 |
T |
|
| Q |
309 |
ctttttgaccccaacaaaaagaagatggtaatctgtg |
345 |
Q |
| |
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|||||||||||||| |||||||||| ||||||||||| |
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| T |
28892281 |
ctttttgaccccaagaaaaagaagaaggtaatctgtg |
28892245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 26 - 345
Target Start/End: Complemental strand, 28902527 - 28902199
Alignment:
| Q |
26 |
aggtgagggggaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgacttggttggcacgtcaagagttaaaccagtaaag |
125 |
Q |
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||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||| | || | | |
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| T |
28902527 |
aggtgagggggaagacgatactggtgaatctgatgcgagtgactttataggttctgattgtgatgacttggttggcacgtcaagagttaaatcggtgagg |
28902428 |
T |
|
| Q |
126 |
agaaagaaga------ataaggttaaatcaataa---atgggaaagtagcaaaagataagaaaaaggattttgttggatggggttcaagaagtctcatag |
216 |
Q |
| |
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||||||||| | ||| | || ||||||| | |||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28902427 |
agaaagaagtgcagtgaaaagctgaagtcaataataaaagggaaagtagtgaaacatacgaaaaaggattttgttggatggggttcaagaagtctcatag |
28902328 |
T |
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| Q |
217 |
attttcttaaaaatattggtgaagacacgaccaaagctttttccgaaattgatgttgcttcgatcatccataagtactgccnnnnnnnccagctttttga |
316 |
Q |
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|||||||||||| ||||||| ||||||||| |||| || || ||| |||||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
28902327 |
attttcttaaaagtattggtagagacacgactgaagcgttgtctgaacttgatgttgcttggatcatcatccagtactgccacacaaaccagctttttga |
28902228 |
T |
|
| Q |
317 |
ccccaacaaaaagaagatggtaatctgtg |
345 |
Q |
| |
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|||||| ||||||||||| ||||| |||| |
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| T |
28902227 |
ccccaagaaaaagaagatcgtaatttgtg |
28902199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 144 - 280
Target Start/End: Complemental strand, 28935643 - 28935507
Alignment:
| Q |
144 |
aaatcaataaatgggaaagtagcaaaagataagaaaaaggattttgttggatggggttcaagaagtctcatagattttcttaaaaatattggtgaagaca |
243 |
Q |
| |
|
||||||||||| || |||| || |||||| ||||| | || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
28935643 |
aaatcaataaaaggaaaagcagtaaaagagaagaacagtgactttgttggatggggttcaagaagtctcatagattttcttaaagatattggtagagaca |
28935544 |
T |
|
| Q |
244 |
cgaccaaagctttttccgaaattgatgttgcttcgat |
280 |
Q |
| |
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|| | ||||| ||| | ||| ||||||||||||||| |
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| T |
28935543 |
cggcaaaagcatttacggaacatgatgttgcttcgat |
28935507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 28935748 - 28935692
Alignment:
| Q |
36 |
gaagatgataccggtgaatctgatgcaagtgactttataggttctgattctgacgac |
92 |
Q |
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||||||||| | ||||| ||||||| ||| |||||||||||||||||| ||||||| |
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| T |
28935748 |
gaagatgatgctggtgactctgatgtgagttactttataggttctgattgtgacgac |
28935692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 34009581 - 34009511
Alignment:
| Q |
5 |
tgacttggaaccgtatgaaagaggtgagggggaagatgataccggtgaatctgatgcaagtgactttatag |
75 |
Q |
| |
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||||||||| || |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||| |
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| T |
34009581 |
tgacttggatccatatgaagtaggtgagggggaagatgatactggtgaatctgatgtgagtgactttatag |
34009511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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