View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_high_1 (Length: 663)
Name: NF3305_high_1
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 247 - 658
Target Start/End: Original strand, 39690820 - 39691231
Alignment:
| Q |
247 |
gtgtcttaaccatataataatcgagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga |
346 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39690820 |
gtgtcttaaccatataataatggagagtttggctaaaaagcaagtaaaatttagtcgatgattgtttccgtcagaatatgaattcagatcgatctcctga |
39690919 |
T |
|
| Q |
347 |
actatttgttgctcaatgagctcattcttgagctcaatcacttgatatcaaaagcatgtcaatattatttaaatggttatannnnnnnnnnnnnnnngtt |
446 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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| T |
39690920 |
actatttgtcgctcaatgagctcattcttgagctgaatcacttgatataaaaagcatgtcaatattatttaaatggttatattttttattttattttgtt |
39691019 |
T |
|
| Q |
447 |
gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691020 |
gattaattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcat |
39691119 |
T |
|
| Q |
547 |
caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt |
646 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39691120 |
caatgcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagtt |
39691219 |
T |
|
| Q |
647 |
gcctttgcttct |
658 |
Q |
| |
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|||||||||||| |
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| T |
39691220 |
gcctttgcttct |
39691231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 232
Target Start/End: Original strand, 39690584 - 39690796
Alignment:
| Q |
20 |
cacccggtttgtaaaagagcacacaaagtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39690584 |
cacccggtttgtaaaagagcacacaaagtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagc |
39690683 |
T |
|
| Q |
120 |
aaacgtggtggttggataagtttcactttcttcattggtctctctctttttcctttcatcttcttactcatcaaacattattaattcactcacttttaca |
219 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
39690684 |
aaacgtggtggttggataagtttccctttcttcattggtctctctctttttcctttcatgttcttactcatcaaacattattaattcactcactcttaca |
39690783 |
T |
|
| Q |
220 |
catctaaagagta |
232 |
Q |
| |
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||||||||||||| |
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| T |
39690784 |
catctaaagagta |
39690796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 39931743 - 39931573
Alignment:
| Q |
47 |
gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagcaaacgtggtggttggataagtttcact |
146 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||| ||||||||||||| | || |
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| T |
39931743 |
gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttaagtaatgggagcaagcgtggcggttggataagttcccct |
39931644 |
T |
|
| Q |
147 |
ttcttcattggtctctctctttttcctttcatcttcttactcatcaaacattattaattcactcacttttaca |
219 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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| T |
39931643 |
ttcttcattggtct--ctctttttcctttcatcttttaactcatcaaacattattaattcactcacttttaca |
39931573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 47 - 181
Target Start/End: Original strand, 39699727 - 39699859
Alignment:
| Q |
47 |
gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagcaaacgtggtggttggataagtttcact |
146 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| || |
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| T |
39699727 |
gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagtttgagtattgggagcaagcgtggtggttggataagtttccct |
39699826 |
T |
|
| Q |
147 |
ttcttcattggtctctctctttttcctttcatctt |
181 |
Q |
| |
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||||||||||| | |||||| ||||||||||||| |
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| T |
39699827 |
ttcttcattgg--tatctcttcttcctttcatctt |
39699859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 454 - 658
Target Start/End: Complemental strand, 39931190 - 39930986
Alignment:
| Q |
454 |
tataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaatgca |
553 |
Q |
| |
|
||||||||||||| ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||| |||| |
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| T |
39931190 |
tataggtatgatagcggggatgtcacttggaagcaccggaattgttggaaacttgattgtatatcttacaagagaattcaatataaagagcatcactgca |
39931091 |
T |
|
| Q |
554 |
gctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcctttg |
653 |
Q |
| |
|
|||| ||| ||| ||||| ||||||||||| ||| |||||||| | || || |||||| ||||||| ||||||||||| || |||| |||||||||| |
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| T |
39931090 |
actcaaatttcaaatgttgtcgttggaagcaccagtatatttccagtagtggccgcaatcgttgctgattctttctttggttctttctatgttgcctttg |
39930991 |
T |
|
| Q |
654 |
cttct |
658 |
Q |
| |
|
||||| |
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|
| T |
39930990 |
cttct |
39930986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 451 - 652
Target Start/End: Original strand, 39700213 - 39700414
Alignment:
| Q |
451 |
aattataggtatgataacggggttgtcacttgcaagcactggaattgttggaaacttgattgtatatcttataagtgaattcaatatcaagagcatcaat |
550 |
Q |
| |
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||||||||||||| || ||||||||||||| ||||| | ||||||| || || ||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
39700213 |
aattataggtatggtagcggggttgtcactagcaagtgcaggaattggggggaatttgattgtatatcttataaaagaattcaatataaagagcatcaat |
39700312 |
T |
|
| Q |
551 |
gcagctcagattgtaaacgttgttgttggaagcacaagtctatttccacttgttgcagcaatccttgctgactctttctttggctcattcttagttgcct |
650 |
Q |
| |
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|||||||| |||||||||||||||||||||||| | | |||||| ||| | |||| |||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
39700313 |
gcagctcaaattgtaaacgttgttgttggaagctccaatctattaccaatcattgctgcaatccttgctgattctttctttggctctttctctgttgcct |
39700412 |
T |
|
| Q |
651 |
tt |
652 |
Q |
| |
|
|| |
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|
| T |
39700413 |
tt |
39700414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 39937111 - 39936980
Alignment:
| Q |
47 |
gtgaagtgcaacaatggatggtaaggtagaagcatcctcaaaagaagcagatgagagcttgagtattgggagcaaacgtggtggttggataagtttcact |
146 |
Q |
| |
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||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||||| ||||||||||||||| | |
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| T |
39937111 |
gtgaagtgcaacaatggatggtaagctagcagcatcctcaaaagaagcacatgagagc---------------aagcgtggcggttggataagtttcccc |
39937027 |
T |
|
| Q |
147 |
ttcttcattggtctctctctttttcctttcatcttcttactcatcaa |
193 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||| | ||||||||| |
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|
| T |
39937026 |
ttcttcattggtttctctctttttactttcatcttttaactcatcaa |
39936980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 510 - 584
Target Start/End: Complemental strand, 39935391 - 39935317
Alignment:
| Q |
510 |
ttgtatatcttataagtgaattcaatatcaagagcatcaatgcagctcagattgtaaacgttgttgttggaagca |
584 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||| ||| ||||||||||||||| ||||| | ||||||| |
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|
| T |
39935391 |
ttgtatatcttatacaagaattcaatataaagagcatcattgctgctcagattgtaaacattgttatcggaagca |
39935317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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