View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_high_12 (Length: 310)
Name: NF3305_high_12
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 50993663 - 50993384
Alignment:
| Q |
19 |
aaccggtgcagccacagccacgggaacagcatttgcagccaccgccgaatcaacaatattgtaaacctctatatcaaaacaaccaggcaatttcctctct |
118 |
Q |
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| T |
50993663 |
aaccggtgcggccacagccacgggaacagcatttgcagccaccgccgaatcaagaatattgtaaacctctatatcaaaacaaccaggcaatttcctctct |
50993564 |
T |
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| Q |
119 |
ctcctcaactcaacgttcatcaaccaaaacgactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgcccc |
218 |
Q |
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| T |
50993563 |
ctcctcaactcaacgttcatcaaccaaaacgactcagtttcatcactcacctgagactcccactccttaatcttcttataatctgcggtgagattgcccc |
50993464 |
T |
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| Q |
219 |
atcgcttcttacactgaatcggtgtccggttcacaccatgcttctcacagtacgaagagaccaacgtccacttcatctca |
298 |
Q |
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| T |
50993463 |
atcgcttcttacactgaatcggtgtccggttcacaccatgcttctcacagtacgaagagaccaacgtccacttcttctca |
50993384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 79 - 284
Target Start/End: Original strand, 6526880 - 6527085
Alignment:
| Q |
79 |
gtaaacctctatatcaaaacaaccaggcaatttcctctctctcctcaactcaacgttcatcaaccaaaacgactcagtttcatcactcacctgagactcc |
178 |
Q |
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||||||||| |||||||| | |||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||| ||||||||| |||| |
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| T |
6526880 |
gtaaacctccttatcaaaatacccaggcaatttcctctctctcctcaaatcattcctcatcaaccaaaacgactccgtttcatctctcacctgactctcc |
6526979 |
T |
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| Q |
179 |
cactccttaatcttcttataatctgcggtgagattgccccatcgcttcttacactgaatcggtgtccggttcacaccatgcttctcacagtacgaagaga |
278 |
Q |
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| T |
6526980 |
cactcctttatcttcttataatctccggcgaggttgctccaccgcttcctacactgaatcggaccccggttcacaccgtgtttcttacaatacgaagaaa |
6527079 |
T |
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| Q |
279 |
ccaacg |
284 |
Q |
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|||||| |
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| T |
6527080 |
ccaacg |
6527085 |
T |
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