View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_high_3 (Length: 524)
Name: NF3305_high_3
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 70 - 363
Target Start/End: Original strand, 427868 - 428167
Alignment:
| Q |
70 |
tcttatattctaattataaagaaagcacaaaaacaaattgttaacgcaacatagataacacacaatataagtttttcnnnnnnnnctcaccaattgaaat |
169 |
Q |
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| T |
427868 |
tcttatattctaattataaagaaagcacaaaaacaaattgttaacgcaacatagataacacacaatataagtttttcaaaaaaaactcaccaattgaaat |
427967 |
T |
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| Q |
170 |
ggaatttttggatctggcagagctacagnnnnnnnnn------taacacatttaatttcgtctttaaatgatttacgagtttgaagtttgggatcaaata |
263 |
Q |
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| T |
427968 |
ggaatttttgcatctggcagagctacagaaaagaaaaaaaaaataacacatttaatttcgtctttaaatgatttacgagtttgaagtttgggatcaaata |
428067 |
T |
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| Q |
264 |
cttacgtatgacacaagtcattggtaaaatattgaatgtcatcagcagtaaaatcattgagttgatgtccgaaatttcttctgagtggcctgagcaagta |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428068 |
cttacgtatgacacaagtcattggtaaaatattgaatgtcatcagcagtaaaatcattgagttgatgtccgaaatttcttctgagtggcctgagcaagta |
428167 |
T |
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