View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_high_9 (Length: 329)
Name: NF3305_high_9
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 35178141 - 35178450
Alignment:
| Q |
16 |
agaaacatactcttaataggaagatctacaagcataagcatgaatttgtctatgtttggctttgcaccgcacgttaaagtcggtgtttgaccagcagtga |
115 |
Q |
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| T |
35178141 |
agaaacatactcttaataggaagatctacaagcataagcatgaatttgtctatgtttggctttgcaccgcacgttaaagtcggtgtttgaccagcagtga |
35178240 |
T |
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| Q |
116 |
aggtaactggatgcaatccaaacatgttaacatagttttagtcattcattcaacatgatttaggcttagaccttatttcaattccttgaacaacaagacc |
215 |
Q |
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| T |
35178241 |
aggtaactagatgcaatccaaacatgttaacatagttttagtcattcattcaacatgatttaggcttagaccttatttcaattccttgaacaacaagacc |
35178340 |
T |
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| Q |
216 |
acccttccaaccaccacctttgacctcacaaacacctatctccacctccttatcatttcctccttcgttgaagaactctcccacttccatctccaaccac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
35178341 |
acccttccaaccaccacctttgacctcacaaacacctatctccacctccttatcatttcctccttcattgaagaactctcccaattccatctccaaccac |
35178440 |
T |
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| Q |
316 |
ccatctgctc |
325 |
Q |
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|||||||||| |
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| T |
35178441 |
ccatctgctc |
35178450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 135 - 325
Target Start/End: Original strand, 35182217 - 35182407
Alignment:
| Q |
135 |
aaacatgttaacatagttttagtcattcattcaacatgatttaggcttagaccttatttcaattccttgaacaacaagaccacccttccaaccaccacct |
234 |
Q |
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|||||||||||| | ||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35182217 |
aaacatgttaacttggttttagtcattctttcaacatgatttagtcttaggccttatttcaattccttgaacaacaagaccacccttccaaccaccacct |
35182316 |
T |
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| Q |
235 |
ttgacctcacaaacacctatctccacctccttatcatttcctccttcgttgaagaactctcccacttccatctccaaccacccatctgctc |
325 |
Q |
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| T |
35182317 |
ttgacctcacaaacacctatgtccacctgcttatcatctcctccttcattgaagaactctcccagttccatctccaaccatccatctgctc |
35182407 |
T |
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