View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3305_low_11 (Length: 324)

Name: NF3305_low_11

Description: NF3305

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF3305_low_11

[»] chr7 (1 HSPs)

Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)

Name: chr7

Description:

Target: chr7; HSP #1

Raw Score: 182; E-Value: 2e-98

Query Start/End: Original strand, 7 - 299

Target Start/End: Original strand, 3980924 - 3981221

Alignment:

Q	7	tcgaagaatatcgtcggcaaaatcccagcatccattccagagctcacatacccatagaccttaatcctcaacattaaccctaacctctccggacctatcc	106	Q
		\|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3980924	tcgaacaaaatcgtgggcgaaatcccagcatccattccagagctcacgtacccatagaccttaatcctcaacattaaccctaacctctccggacctatcc	3981023	T

Q	107	ctaatttcttaatgaggttaaggcacgtgtattccctcaaactcgacagcaaccg-----gtaattccattcccactttcttcgccaggcccccaaatct	201	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|
T	3981024	ctaatttcttaatgaggttaagacacatgcataccctcaaactcgacaacaaccgattaactagttccattcccactttctttgttaggctcccaaatct	3981123	T

Q	202	tcggtgaatgaaccttcaacaaaacaagctgaatggaagaatcccacctacattcggctccttagtgtccaacttcttcctattctttcgtgaaacct	299	Q
		\|\| \| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	3981124	tcagcgaataaaccttcaacaaaacaagctgaatggaagaatcccacctacattcggctccctagtgcccaacttctttgtattctttcgggaaacct	3981221	T

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