View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_low_14 (Length: 286)
Name: NF3305_low_14
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 1581305 - 1581550
Alignment:
| Q |
18 |
gaagcttgatgaagaagactttgaaatagtttataaggagatggaccagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattac |
117 |
Q |
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| T |
1581305 |
gaagcttgatgaagaagactt-gaaatagtttataaggagatggaccagtatcagcctctggaagaattagtcttacctagctaggaagaattacattac |
1581403 |
T |
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| Q |
118 |
atagtcctcaagagtttatattggtattcaatttgattatgaacaacttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttcta |
217 |
Q |
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| T |
1581404 |
atagtcctcaagagtttatattggtattcaatttgattatgaacaacttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttcta |
1581500 |
T |
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| Q |
218 |
gttttaagtagttgcatgcaaaatgttttatactgtttacattattatct |
267 |
Q |
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| T |
1581501 |
gttttaagtagttgcatgcaaaatgttttatactgtttacattattatct |
1581550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 1603510 - 1603265
Alignment:
| Q |
18 |
gaagcttgatgaagaagactttgaaatagtttataaggagatggaccagtatcagcctcttgaagaattagtcttacctagctaggaagaattacattac |
117 |
Q |
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| T |
1603510 |
gaagcttgatgaagaagactt-gaaatagtttataaggagatggaccagtatcagcctctggaagaattagtcttacctagctaggaagaattacattac |
1603412 |
T |
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| Q |
118 |
atagtcctcaagagtttatattggtattcaatttgattatgaacaacttgtaaaagtattttattttacaagccacgtagtgtttgagttgtttcttcta |
217 |
Q |
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| T |
1603411 |
atagtcctcaagagtttatattggtattcaatttgattatgaacaacttgtaaaagtatt---ttttacaagccacgtagtgtttgagttgtttcttcta |
1603315 |
T |
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| Q |
218 |
gttttaagtagttgcatgcaaaatgttttatactgtttacattattatct |
267 |
Q |
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| T |
1603314 |
gttttaagtagttgcatgcaaaatgttttatactgtttacattattatct |
1603265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 1613920 - 1613865
Alignment:
| Q |
191 |
cacgtagtgtttgagttgtttcttctagttttaagtagttgcatgcaaaatgtttta |
247 |
Q |
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| T |
1613920 |
cacgtagt-tttgagttgattcttctagttttaagttgctgcataaaaaatgtttta |
1613865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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