View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_low_2 (Length: 593)
Name: NF3305_low_2
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 197 - 582
Target Start/End: Complemental strand, 51662072 - 51661668
Alignment:
| Q |
197 |
atgtgtgacgtttctccgtcaagtattgtggtttgtgagataaaggtcggatgat--gcccggacctaaatgacgttctccggcattgatggtgnnnnnn |
294 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
51662072 |
atgtgtgacgtttctccgtcaagtatcgtggtttgtgagataaaggtcggatgatatgcccggacctaaatgacgttctccggcattgatggtgtttttt |
51661973 |
T |
|
| Q |
295 |
ngcttgtacttggtggatctaaaatttaaatggccagggtgtgga----------------ggtggatttggtgttgtgttaaagtcataatgagagatt |
378 |
Q |
| |
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||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
51661972 |
tgcttgtactgggtggatctaaaatttaaatggccatggtgtggttgaacagaaggtttatggtggatttggtgttttgttaaagtcataatgagagatt |
51661873 |
T |
|
| Q |
379 |
gacaacaaatttgaagttgagtggttgttgatggaggtggattaagggtggatgaagggatggtactggtggtttgaactggggagatagatcaattgct |
478 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51661872 |
gacaacaaatttgaagttgagtggttgttgatggaggtggattaagggtggatgaagggatggtcctggtggtttgaactggggagatagatcaattgct |
51661773 |
T |
|
| Q |
479 |
ttcctatgctggtcttggtagaaggccaaaagaaaaagtaaataaaagatgcagtaacctgaagatgcggtaggccaa-aaaatgattcaagatatggat |
577 |
Q |
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| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| |
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| T |
51661772 |
tccctatgctggtcttggtagaagaccaaaagaaaaagtaaataaaagatgcagtaaccttaagaagcggtaggccaaaaaaatgattcaagatatggat |
51661673 |
T |
|
| Q |
578 |
gatgt |
582 |
Q |
| |
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||||| |
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| T |
51661672 |
gatgt |
51661668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 339 - 582
Target Start/End: Complemental strand, 44976327 - 44976076
Alignment:
| Q |
339 |
aggtggatttggtgttgtgttaaagtcataatgagagattgacaacaaatttgaagttgagtggttgttgatggaggtggattaagggtggatgaaggga |
438 |
Q |
| |
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|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44976327 |
aggtggatttagtgttttgttaaagtcataatgagagattgacaacaaatttgaagttgagtggttgttgatggaggtggatcaagggtggatgaaggga |
44976228 |
T |
|
| Q |
439 |
tggtactggtggtttgaactggggagatagatcaattgctttcctatgctgg--------tcttggtagaaggccaaaagaaaaagtaaataaaagatgc |
530 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
44976227 |
tggtcctggtggtttgaactggggagatagatcaattgcttccctatgctggtcttctagtcttggtagaagaccaaaagaaaaagtaaataaaagatgc |
44976128 |
T |
|
| Q |
531 |
agtaacctgaagatgcggtaggccaaaaaatgattcaagatatggatgatgt |
582 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |
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|
| T |
44976127 |
agtaacctgaagaagcggtgggccaaaaaatgattcaagatatagatgatgt |
44976076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 197 - 338
Target Start/End: Complemental strand, 44976497 - 44976356
Alignment:
| Q |
197 |
atgtgtgacgtttctccgtcaagtattgtggtttgtgagataaaggtcggatgatgcccggacctaaatgacgttctccggcattgatggtgnnnnnnng |
296 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
44976497 |
atgtgtgacgtttctccgtcaagtatcgtggtttgtaagataaaggtcggatgatgcccggacctaaatgacgttctccggcattgaaggtgtttttttg |
44976398 |
T |
|
| Q |
297 |
cttgtacttggtggatctaaaatttaaatggccagggtgtgg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
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| T |
44976397 |
cttgtacttggtggatctaaaatttaaatggccatggtgtgg |
44976356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 8490514 - 8490694
Alignment:
| Q |
19 |
cccttcctatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtcttcaacctcaacagaagtaccattcttgc |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8490514 |
cccttcccatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtcttcaacctcaacagacgtaccattcttgc |
8490613 |
T |
|
| Q |
119 |
cacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgctatg |
199 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8490614 |
cacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgctatg |
8490694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 132; Significance: 3e-68; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 40570847 - 40571026
Alignment:
| Q |
19 |
cccttcctatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtcttcaacctcaacagaagtaccattcttgc |
118 |
Q |
| |
|
||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
40570847 |
cccttcccatttggaaccaccaataattgttctctagacaacacctttctcattgattgcaacaaaacatcttcaacctcaacagacgtaccattcttgc |
40570946 |
T |
|
| Q |
119 |
cacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgctat |
198 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |||||||||| || |||||||||| ||| |||||||||||| |
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| T |
40570947 |
cacagactaatcaaagtgttctaaacatctcactcgacggtgaactgcgtgctgcatggccagtagcaagtgattgctat |
40571026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 40577270 - 40577449
Alignment:
| Q |
19 |
cccttcctatttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtcttcaacctcaacagaagtaccattcttgc |
118 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
40577270 |
cccttcccatttggaaccaccaaggattgttctctagacaacacctttctcatcgattgcaacaaaacatcttcaacctcaacagaggtaccattcttgc |
40577369 |
T |
|
| Q |
119 |
cacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgctat |
198 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||||||||| || |||||||||||| ||| ||| |||||||| |
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|
| T |
40577370 |
cacagactaatcaaagtgttctaaacatctcacttaatggtgaacttcacgttgcatggccagtagccagctattgctat |
40577449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 27 - 197
Target Start/End: Original strand, 40566162 - 40566338
Alignment:
| Q |
27 |
atttggaaccaccaagagttgttctctagacaacacctttctcattgattgcaacaaaacgtctt------caacctcaacagaagtaccattcttgcca |
120 |
Q |
| |
|
|||||||||||| |||| |||||| || ||||| |||||||||||| ||||||||||||| |||| ||||||||||| | || || | |||| |
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|
| T |
40566162 |
atttggaaccactaagaattgttccctcgacaatacctttctcattaattgcaacaaaacatcttcaactccaacctcaacacatgttccctacttggat |
40566261 |
T |
|
| Q |
121 |
cagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgcta |
197 |
Q |
| |
|
|||||||||||| ||| ||||| ||||||||| |||||||| |||| |||||||||||| ||| ||| |||||||| |
|
|
| T |
40566262 |
aagagtaatcaaaatgtcctaaatatctcactcaatggtgaattgcacgttgcatggccagtagccagcgattgcta |
40566338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 40595656 - 40595728
Alignment:
| Q |
126 |
taatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggcagtgattgctat |
198 |
Q |
| |
|
||||||| |||| |||| || ||||| |||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
40595656 |
taatcaacgtgtcttaaatatatcacttaatggtgaactgcatgttgcatggccagtagccagacattgctat |
40595728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 2017445 - 2017336
Alignment:
| Q |
88 |
tcttcaacctcaacagaagtaccattcttgccacagagtaatcaaagtgttctaaacatctcactcgatggtgaactgcatgttgcatggccaataggca |
187 |
Q |
| |
|
|||||||||||||| | |||| ||| ||||||| | |||||||| ||| ||||||||||| || ||||||||||||| ||||||||||||| ||| || |
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|
| T |
2017445 |
tcttcaacctcaacccatatacctttcctgccacatactaatcaaactgtcctaaacatctcgcttgatggtgaactgcgtgttgcatggccagtagcca |
2017346 |
T |
|
| Q |
188 |
gtgattgcta |
197 |
Q |
| |
|
| |||||||| |
|
|
| T |
2017345 |
gcgattgcta |
2017336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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