View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_low_5 (Length: 461)
Name: NF3305_low_5
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 12 - 444
Target Start/End: Complemental strand, 44107558 - 44107132
Alignment:
| Q |
12 |
tcatcaagtaaaatacacacttcaaatcaaatcaaatagtataagttccaataatttgatgcattttgtgcttcttttatgtcaacagactataatagac |
111 |
Q |
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| T |
44107558 |
tcatcaagtaaaatacacacttcaaatcaaatcaaatagtataagttccaataatttgatgcattttgtgcttcttttatgtcaacagactataatagac |
44107459 |
T |
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| Q |
112 |
aaaacaaataatgatcgacaatttgtgaattgattttgattaacggactgatgtatcccggtttatttttgtgaaagttgagtttttattaagttctgtt |
211 |
Q |
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| T |
44107458 |
aaaacaaattatgatcgacaatttgtgaattgattttgattaacggactaatgtatcccggtttatttttgtgaaagttgagtttttattaagttctgtt |
44107359 |
T |
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| Q |
212 |
ttctattaaggatatgatacttcaatcaattttaaaccaaaccatagaatcatttataatttttgttgtcaatcagctaaatgtgttgagttgagaacaa |
311 |
Q |
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| T |
44107358 |
ttct-ttaaggatatgatacttcaatcaattttaaaccaaactatagaatcatttataatttttgttgtcaatcagctaaatgt-----gttgagaacaa |
44107265 |
T |
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| Q |
312 |
ctatgagaaaaatatcttgtgctaaaaatagtaagaaaagaatctttcgaaatatttgtacagactgttaaaatagtaaggaggttaaaggaaattttgc |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44107264 |
ctatgagaaaaatatcttgtgctaaaaatagtaagaaaataatctttcgaaatatttgtacagactgttaaaatagtaaggaggttaaaggaaattttgc |
44107165 |
T |
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| Q |
412 |
tttgcttttgatgcacgtttcggtgcaggacct |
444 |
Q |
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| T |
44107164 |
tttgcttttgatgcacgtttcggtgcaggacct |
44107132 |
T |
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