View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_low_6 (Length: 446)
Name: NF3305_low_6
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 32884692 - 32884265
Alignment:
| Q |
11 |
cacagagaccattttgacttcgtctgtcacttatagggactaaagtgactatttactcttcaagatgcttaaaaagttataatttcgataaacagcccca |
110 |
Q |
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| T |
32884692 |
cacagagaccattttgacttcgtctgtcacttatagggactaaagtgactatttactcttcaagatgcttaaaaagttataatttcgataaacagcccca |
32884593 |
T |
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| Q |
111 |
acataagttctttaataccattcattaaataagagtggttaagagttagagcatatacccatccaatagtttttgataggaaatacattgttcttgtatc |
210 |
Q |
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| T |
32884592 |
acataagttctttaataccattcattaaataagagtggttaagagttagagcatatacccatccaatagtttttgataggaaatacattgttcttgtatc |
32884493 |
T |
|
| Q |
211 |
gaaatgcatctgcttctctatccaaggatattgcacctagtttgcaaggaagaaaatgactttacaattaaagtatttttccaaatatagcttacctcaa |
310 |
Q |
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| T |
32884492 |
gaaatgcatctgcttctctatccaaggatattgcacctagtttgcaaggaagaaaatgactttacaattgaagtatttttccaaatatagcttacctcaa |
32884393 |
T |
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| Q |
311 |
ttcaaagcatgtgttggaaaaagttggaa----------aaagcatcacatggaaggaaatgaaagacttgttaacttacttaataatgacagaagtaca |
400 |
Q |
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| T |
32884392 |
ttcaaagcatgtgttggaaaaagttggaaaaagttggaaaaagcatcacatggaaggaaatgaaagacttgttaacttacttaataatgacagaagtaca |
32884293 |
T |
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| Q |
401 |
gatagtgttagcattttgtagtccatgt |
428 |
Q |
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| T |
32884292 |
gatagtgttagcattttgtagtccatgt |
32884265 |
T |
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