View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_low_7 (Length: 378)
Name: NF3305_low_7
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 48390387 - 48390748
Alignment:
| Q |
1 |
tttgttgctactatgtttcttgtgtttgactaaaacagcaaaataaaaacatccatgttctacttctactaggagtatagtttatgtagtggtaatatat |
100 |
Q |
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| T |
48390387 |
tttgttgctactatgtttcttgtgtttgactaaaacagcaaaataaaaacatccatgttctacttctactaggagtatagtttatgtagtggtaatatat |
48390486 |
T |
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| Q |
101 |
tataataaagcgtggtgtcttgtttttgggtcccaagccatatgccactttctttggtctaccaagcaaccttactctttacgcacacaaaggcacgtgc |
200 |
Q |
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| T |
48390487 |
tataataaagcgtggtgtcttgtttttgggtcccaagccatatgccactttctttggtctaccaagcaaccttactctttacgcacacaaaggcacgtgc |
48390586 |
T |
|
| Q |
201 |
aatacagatttgggttcataaagaaatatatcatgacatggagatatcagaaatgagcactcatatgtaagaacgtagttaaaccgagtcatcttcttga |
300 |
Q |
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| T |
48390587 |
aatacagatttgggttcataaagaaatatatcatgacatggagatatcagaaatgagcactcatatgtaagaacgtagttaaaccgagtcatcttcttga |
48390686 |
T |
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| Q |
301 |
ttggtgtgtgtgatcagtggtgggctcagctttacaactaatcttagaacaagatgaagaac |
362 |
Q |
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| T |
48390687 |
ttggtgtgtgtgatcagtggtgggctcagctttacaactaatcttagaacaagatgaagaac |
48390748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 17820719 - 17820750
Alignment:
| Q |
55 |
atgttctacttctactaggagtatagtttatg |
86 |
Q |
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| T |
17820719 |
atgttctacttctactaggagtatagtttatg |
17820750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 86
Target Start/End: Original strand, 17860889 - 17860920
Alignment:
| Q |
55 |
atgttctacttctactaggagtatagtttatg |
86 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
17860889 |
atgttctacttctactaggagtatagtttatg |
17860920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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