View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_low_8 (Length: 365)
Name: NF3305_low_8
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 12 - 348
Target Start/End: Original strand, 54721081 - 54721414
Alignment:
| Q |
12 |
atgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaaggaaataaagttactgatagatattgtacactatggcaaaaaccagta |
111 |
Q |
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| T |
54721081 |
atgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaaggaaataaagttactgatagatattgtacactatggcaaaaaccagta |
54721180 |
T |
|
| Q |
112 |
ctgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaaga |
211 |
Q |
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| T |
54721181 |
ctgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaaga |
54721280 |
T |
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| Q |
212 |
tgaagctggtactctgaatagttctgctgctgaggagggtgatggaagagttaatcaattactagtgaaagatgaagctgatcagcttcatgatgatgat |
311 |
Q |
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| T |
54721281 |
tgaagttggtactctgaatagtgctgctgct---gagggtgatggaagagttaatcaattactagtgaaagatgaagctgatcagcttcatgatgatgat |
54721377 |
T |
|
| Q |
312 |
gacaaatctcataagtctcgcaaaaagataataataa |
348 |
Q |
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| T |
54721378 |
gacaaatctcataagtctcgcaaaaagataataataa |
54721414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 13 - 313
Target Start/End: Original strand, 54714162 - 54714450
Alignment:
| Q |
13 |
tgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaaggaaataaagttactgatagatattgtacactatggcaaaaaccagtac |
112 |
Q |
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| T |
54714162 |
tgaagtgatatgaagcctattttattccatgcaaaacaataacgataggaagaaaataaaaatactgagtgatattgtacactatggcaaaaac------ |
54714255 |
T |
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| Q |
113 |
tgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagat |
212 |
Q |
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| T |
54714256 |
---ttcaattcttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagat |
54714352 |
T |
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| Q |
213 |
gaagctggtactctgaatagttctgctgctgaggagggtgatggaagagttaatcaattactagtgaaaga---tgaagctgatcagcttcatgatgatg |
309 |
Q |
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| T |
54714353 |
gaagctggtattctgaatag---tgctgctgccgggggtgatggaagagttaatca---accggtgaaagatattgaagctgatcagcatgatgatgatg |
54714446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 54728077 - 54728205
Alignment:
| Q |
84 |
atattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtg |
183 |
Q |
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| T |
54728077 |
atattgcacactatgacaaaaaac--tactgcttcacttgttctgcttgtccttgttgtggcatt-tttgtgaatggctatagtg---ttgctgcgggtg |
54728170 |
T |
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| Q |
184 |
aagtaagagctaatcaactggtgaaagatgaagct |
218 |
Q |
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| T |
54728171 |
tgggaagagataatcaactggagaaagatgaagct |
54728205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 88 - 348
Target Start/End: Original strand, 5297310 - 5297567
Alignment:
| Q |
88 |
tgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagt |
187 |
Q |
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| T |
5297310 |
tgtacactatggcaaaaaccagtactgtttcacttgttctagttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagt |
5297409 |
T |
|
| Q |
188 |
aagagctaatcaactggtgaaagatgaagctggtactctgaatagttctgctgctgaggagggtgatggaagagttaatcaattactagtgaaagatgaa |
287 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5297410 |
aagagctaatcaactggtgaaagatgaatctggtactctgaatagtgctgctgct---gagggtgatggaagagttaatcaattactagtgaaagatgaa |
5297506 |
T |
|
| Q |
288 |
gctgatcagcttcatgatgatgatgacaaatctcataagtctcgcaaaaagataataataa |
348 |
Q |
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| T |
5297507 |
gctgatcagcttcatgatgatgatgacaaatctcataagtctcgcaaaaagataataataa |
5297567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 84 - 218
Target Start/End: Original strand, 5302739 - 5302868
Alignment:
| Q |
84 |
atattgtacactatggcaaaaaccagtactgtttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtg |
183 |
Q |
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|||||| |||||||| |||||| | ||||| |||||||||||| |||||||||| |||||||||| || ||||||||||||||| |||||| ||||| |
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| T |
5302739 |
atattgcacactatgacaaaaaac--tactgcttcacttgttctgcttgtccttgttgtggcattatttgtgaatggctatagtg---ctgctgtgggtg |
5302833 |
T |
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| Q |
184 |
aagtaagagctaatcaactggtgaaagatgaagct |
218 |
Q |
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| T |
5302834 |
tgggaagagataatcaactggagaaagatgaagct |
5302868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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