View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3305_low_9 (Length: 344)
Name: NF3305_low_9
Description: NF3305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3305_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 46870837 - 46871110
Alignment:
| Q |
1 |
tgttccaaaatgttcagtgtcaacctaacaagtagttagttacatagttgttgtgaactcaaattatttaactttcaaacacactactagatagattata |
100 |
Q |
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| T |
46870837 |
tgttccaaaatgttcagtgtcaacctaacaagtagttagttacatagttgttgtgaactcaaattatttaactttcaaacacactactagatagattata |
46870936 |
T |
|
| Q |
101 |
attggctttagaaaaagaatagaagtagaacaaaacaaaataacctaagattttaatgtttgtcttacttaacatatactataaagannnnnnnctacga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
46870937 |
attggctttagaaaaagaatagaagtagaacaaaacaaaataacctaagattttaatgtttgccttacttaacatatactataaagatttttttctacga |
46871036 |
T |
|
| Q |
201 |
aggtttaacatatactgtaaagatacgaggtaaaattatatattt--catttgtatacttcagaaatatccttc |
272 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |
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| T |
46871037 |
aggtttaacatatactgtaaagatacgaggtaaagttatatatttcacatgtgtatacttcagaaatatccttc |
46871110 |
T |
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