View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306-Insertion-10 (Length: 430)

Name: NF3306-Insertion-10
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306-Insertion-10
NF3306-Insertion-10
[»] chr7 (20 HSPs)
chr7 (8-161)||(9352055-9352208)
chr7 (239-334)||(9351535-9351628)
chr7 (239-334)||(42203001-42203096)
chr7 (239-334)||(33758084-33758179)
chr7 (252-334)||(33757460-33757542)
chr7 (239-334)||(23162073-23162169)
chr7 (260-334)||(5218902-5218976)
chr7 (252-334)||(23806756-23806838)
chr7 (8-99)||(426698-426789)
chr7 (239-334)||(9351226-9351321)
chr7 (239-334)||(21858373-21858468)
chr7 (239-334)||(42202257-42202352)
chr7 (260-334)||(3766582-3766656)
chr7 (260-334)||(45865518-45865592)
chr7 (8-48)||(650171-650211)
chr7 (239-317)||(31928533-31928611)
chr7 (260-334)||(5217884-5217958)
chr7 (260-334)||(45864547-45864621)
chr7 (255-292)||(23806341-23806378)
chr7 (270-334)||(25903620-25903684)
[»] chr8 (18 HSPs)
chr8 (239-334)||(28223595-28223689)
chr8 (260-334)||(6819314-6819388)
chr8 (239-334)||(35009130-35009225)
chr8 (252-334)||(37402595-37402677)
chr8 (260-334)||(6819947-6820021)
chr8 (240-334)||(28222816-28222910)
chr8 (260-334)||(34901620-34901694)
chr8 (260-334)||(39514984-39515058)
chr8 (260-331)||(34503339-34503410)
chr8 (261-334)||(31985132-31985205)
chr8 (261-334)||(31986095-31986168)
chr8 (252-292)||(5873795-5873835)
chr8 (257-320)||(34504063-34504125)
chr8 (263-334)||(34902602-34902673)
chr8 (252-334)||(2269153-2269235)
chr8 (273-334)||(35009805-35009866)
chr8 (212-292)||(37403366-37403447)
chr8 (252-292)||(5874625-5874665)
[»] chr2 (21 HSPs)
chr2 (240-334)||(1873577-1873671)
chr2 (239-334)||(15481586-15481681)
chr2 (239-334)||(18532786-18532881)
chr2 (246-334)||(16647732-16647820)
chr2 (260-334)||(10746337-10746411)
chr2 (252-334)||(15809241-15809323)
chr2 (239-334)||(16647152-16647248)
chr2 (263-331)||(28461184-28461252)
chr2 (239-334)||(20473912-20474007)
chr2 (239-334)||(33868571-33868665)
chr2 (260-334)||(15748874-15748948)
chr2 (260-334)||(22467101-22467175)
chr2 (260-334)||(28462357-28462431)
chr2 (260-331)||(45323761-45323833)
chr2 (239-334)||(15747847-15747942)
chr2 (239-334)||(22468092-22468187)
chr2 (239-334)||(22474313-22474408)
chr2 (239-285)||(22292315-22292361)
chr2 (260-334)||(44242221-44242295)
chr2 (255-292)||(4024984-4025021)
chr2 (239-327)||(34067884-34067971)
[»] chr3 (18 HSPs)
chr3 (213-334)||(11359527-11359648)
chr3 (212-334)||(2305370-2305492)
chr3 (213-334)||(11360213-11360334)
chr3 (239-334)||(18027873-18027967)
chr3 (252-334)||(46207831-46207913)
chr3 (239-331)||(51545075-51545167)
chr3 (260-334)||(18141056-18141130)
chr3 (239-331)||(25309032-25309124)
chr3 (239-334)||(54567610-54567705)
chr3 (260-334)||(29184846-29184920)
chr3 (254-334)||(34061457-34061537)
chr3 (260-334)||(48044592-48044667)
chr3 (260-334)||(38344246-38344320)
chr3 (212-292)||(46207182-46207262)
chr3 (239-334)||(4217773-4217868)
chr3 (239-334)||(31173451-31173546)
chr3 (272-334)||(43112156-43112218)
chr3 (262-334)||(38243569-38243641)
[»] chr1 (32 HSPs)
chr1 (212-334)||(31677717-31677839)
chr1 (212-334)||(47024564-47024686)
chr1 (252-332)||(49201251-49201331)
chr1 (255-334)||(44754467-44754546)
chr1 (239-334)||(49200887-49200981)
chr1 (260-334)||(24546496-24546570)
chr1 (239-334)||(26943595-26943691)
chr1 (239-334)||(51471046-51471141)
chr1 (252-334)||(25601782-25601864)
chr1 (239-334)||(47221008-47221103)
chr1 (240-334)||(13903269-13903363)
chr1 (262-334)||(28414858-28414930)
chr1 (270-334)||(34932496-34932560)
chr1 (260-334)||(47145268-47145342)
chr1 (260-334)||(47221809-47221883)
chr1 (239-334)||(388039-388134)
chr1 (243-334)||(16786017-16786108)
chr1 (239-334)||(26944255-26944349)
chr1 (240-334)||(7780118-7780212)
chr1 (260-334)||(48716440-48716514)
chr1 (212-292)||(44753367-44753448)
chr1 (8-49)||(52596080-52596121)
chr1 (262-334)||(22591400-22591472)
chr1 (239-334)||(32130740-32130836)
chr1 (262-334)||(45833042-45833114)
chr1 (239-334)||(4415039-4415134)
chr1 (239-334)||(31645330-31645425)
chr1 (264-334)||(1826299-1826369)
chr1 (260-334)||(24545575-24545649)
chr1 (260-334)||(47146252-47146326)
chr1 (261-334)||(48717181-48717254)
chr1 (252-292)||(25601038-25601078)
[»] chr6 (17 HSPs)
chr6 (175-334)||(3119352-3119512)
chr6 (212-326)||(30408656-30408770)
chr6 (176-331)||(12239769-12239925)
chr6 (239-334)||(3063349-3063444)
chr6 (240-292)||(18983912-18983964)
chr6 (254-318)||(22365943-22366007)
chr6 (255-334)||(29453816-29453895)
chr6 (252-334)||(18983027-18983109)
chr6 (260-334)||(25386403-25386477)
chr6 (239-292)||(30409577-30409630)
chr6 (239-334)||(26470121-26470216)
chr6 (260-334)||(3062307-3062381)
chr6 (245-334)||(28189516-28189604)
chr6 (239-292)||(3120244-3120297)
chr6 (269-334)||(26469131-26469196)
chr6 (239-292)||(29454622-29454675)
chr6 (270-334)||(32614407-32614471)
[»] chr5 (16 HSPs)
chr5 (239-334)||(11466566-11466662)
chr5 (261-333)||(23932322-23932394)
chr5 (239-334)||(5700529-5700624)
chr5 (253-334)||(11466000-11466081)
chr5 (260-334)||(32145797-32145871)
chr5 (246-334)||(32144966-32145054)
chr5 (239-334)||(28820421-28820516)
chr5 (260-334)||(9750565-9750639)
chr5 (261-334)||(4602872-4602945)
chr5 (260-334)||(9751542-9751616)
chr5 (270-334)||(13947845-13947909)
chr5 (260-334)||(19600091-19600165)
chr5 (239-292)||(5699851-5699904)
chr5 (239-320)||(19601146-19601227)
chr5 (266-334)||(29320236-29320304)
chr5 (239-283)||(34407809-34407853)
[»] scaffold0007 (2 HSPs)
scaffold0007 (213-334)||(15935-16056)
scaffold0007 (252-292)||(14940-14980)
[»] chr4 (24 HSPs)
chr4 (212-334)||(54353434-54353557)
chr4 (239-320)||(41332618-41332698)
chr4 (254-334)||(47765364-47765444)
chr4 (270-334)||(49552138-49552202)
chr4 (239-334)||(3673224-3673319)
chr4 (239-334)||(20613759-20613854)
chr4 (260-334)||(550791-550865)
chr4 (239-328)||(41331867-41331956)
chr4 (239-334)||(12352324-12352419)
chr4 (263-334)||(43860777-43860848)
chr4 (239-334)||(48029507-48029602)
chr4 (252-334)||(3672582-3672664)
chr4 (252-334)||(12760615-12760696)
chr4 (254-320)||(43860621-43860687)
chr4 (239-334)||(34027060-34027155)
chr4 (239-292)||(2657247-2657299)
chr4 (239-334)||(2657955-2658051)
chr4 (270-334)||(7515654-7515718)
chr4 (240-308)||(37265203-37265271)
chr4 (270-334)||(47766418-47766482)
chr4 (239-334)||(34026011-34026106)
chr4 (255-334)||(54053682-54053761)
chr4 (260-334)||(13127606-13127680)
chr4 (254-320)||(47766049-47766115)
[»] scaffold0725 (2 HSPs)
scaffold0725 (260-334)||(4032-4106)
scaffold0725 (253-334)||(4822-4902)
[»] scaffold0039 (1 HSPs)
scaffold0039 (260-334)||(111409-111483)
[»] scaffold0014 (2 HSPs)
scaffold0014 (261-334)||(227490-227563)
scaffold0014 (261-334)||(228453-228526)
[»] scaffold0250 (1 HSPs)
scaffold0250 (264-334)||(4687-4757)
[»] scaffold0098 (1 HSPs)
scaffold0098 (239-331)||(42811-42903)


Alignment Details
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 9352208 - 9352055
Alignment:
Q  8 ttttcaacttcattagcaacacgaagaatgggtgcaatttcagagagagaaggagggacagcttcactgtcaaatattgactcttcaagattggctgccg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  9352208 ttttcaacttcattagcaacacgaagaatgggtgcaatttcagcaagagaaggagggacagcttcactgtcaaatattgaccctccaagattggctgccg 9352109  T
Q  108 tctgcctccatatgagtttccgtggcggtggttccgatggccccgatcccattg 161  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9352108 tctgcctccatatgagtttcagtggcggtggttccgatggccccgatcccattg 9352055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 9351628 - 9351535
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||||    
T  9351628 gttttggaatac-ccctagg-cagctgactgtgcattttcgctgatgtggcacgttgagtcatcgttttctgatgatgtggcacgctgactgtata 9351535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 42203096 - 42203001
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||  ||||||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||| ||||||||||  |||||||||||||    
T  42203096 gttttggaataacccctaggtcagctgactgtgcattttcgctgatgtggtacgctgagtcaccgttttccgatgacgtggtgcgctgactgtata 42203001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 33758179 - 33758084
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||  ||||||||| || |||||||||||||||||||| ||| ||| ||||||| ||||||||| | |||||||||||||    
T  33758179 gttttggaataccccctagaccagctgactgtgtattttcgctgatgtggcacgctgagtcatcgttttctgatgacgtgacgcgctgactgtata 33758084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 33757460 - 33757542
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||| ||||| || ||||||| |||||||||||| ||||||||| ||||| ||||||||||| |||||||||||||    
T  33757460 ccctaggtcagttgactgtgtattttcgttgatgtggcacgctgaatcacctttttctgatgacgtggcgcgctgactgtata 33757542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 23162169 - 23162073
Alignment:
Q  239 gttttggaatacaccc-taggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||| || || ||||| ||| | ||||| |||||||||||||    
T  23162169 gttttggaatacccccctaggccagctgactatgcattttcgctgatgtggcacgttgagtcgcctttttctgataatgtggcgcgctgactgtata 23162073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 5218976 - 5218902
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| |||| |||||| ||||| ||||||||||| |||||||||||||    
T  5218976 cagctgactgtgcatttttgctgatgtggcatgttgcatcacctttttcggatgacgtggcgcgctgactgtata 5218902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 23806838 - 23806756
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| |||| ||| ||||||||||||||||||||||| ||| ||||| ||||| ||||| ||||| |||||||||||||    
T  23806838 ccctaggttagctaactgtgcattttcgctgatgtggcacgctgagtcaccattttctgatgatgtggcgcgctgactgtata 23806756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 426698 - 426789
Alignment:
Q  8 ttttcaacttcattagcaacacgaagaatgggtgcaatttcagagagagaaggagggacagcttcactgtcaaatattgactcttcaagatt 99  Q
    |||||||||||||||||||||||||||||||| |||||||||   ||||||| ||| ||| |||||||||| || || || ||| |||||||    
T  426698 ttttcaacttcattagcaacacgaagaatgggagcaatttcaacaagagaagaaggaacaacttcactgtcgaaaatagattctccaagatt 426789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 9351226 - 9351321
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||| ||||||||| || |||||||||||||||||| | ||| ||||| ||||  ||| | ||||| |||||||||||||    
T  9351226 gttttggaataccccctaggccagctgactgtgtattttcgctgatgtggcatgctgagtcacctttttatgataatgtggcgcgctgactgtata 9351321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 21858468 - 21858373
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||   |||||||| || ||||||||||||||| |||| ||| ||||| ||||| ||||||||||| || ||||||||||    
T  21858468 gttttggaatactccctagactagctgactgtgtattttcgctgatgtgacacgctgagtcacctttttctgatgacgtggcgcgttgactgtata 21858373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 42202257 - 42202352
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||| ||  ||||| || |||||||||||||||||||| ||| ||||| ||||  ||||||||| | |||||||||||||    
T  42202257 gttttggaataccccctaggccaattgactgtgtattttcgctgatgtggcacgatgagtcacctttttatgatgacgtgacgcgctgactgtata 42202352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 3766656 - 3766582
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||||| ||||| ||||||||||  |||||||||||||    
T  3766656 cagctgactgtgcatttttgctgatgtggcatgttgtgtcacctttttcggatgacgtggtgcgctgactgtata 3766582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 45865592 - 45865518
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | ||  ||||| ||||| ||||||||||| |||||||||||||    
T  45865592 cagctgactgtgcatttttgctgatgtggcatgatgcgtcacctttttcggatgacgtggcgcgctgactgtata 45865518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 650211 - 650171
Alignment:
Q  8 ttttcaacttcattagcaacacgaagaatgggtgcaatttc 48  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  650211 ttttcaacttcattagcaacacaaagaatgggtgcaatttc 650171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 317
Target Start/End: Complemental strand, 31928611 - 31928533
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgt 317  Q
    |||||||||||| ||||||  ||||||||| || |||||||||||||||||||  ||| ||||| ||||| ||| ||||    
T  31928611 gttttggaataccccctagaccagctgactgtgtattttcgctgatgtggcacactgagtcacctttttctgattacgt 31928533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 5217884 - 5217958
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| |||| |||| | ||||  |||||| |||| || ||||||||||    
T  5217884 cagctgactgtgcatttttgctgatgtggcatgttggatcagcctttttggatgacatggcgcgatgactgtata 5217958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 45864547 - 45864621
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| || ||||||||| | || ||||||  |||| ||||||||||| ||||||| |||||    
T  45864547 cagctgactgtgcatttttgcagatgtggcatgctgcatcacctctttcggatgacgtggcgcgctgacagtata 45864621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 23806341 - 23806378
Alignment:
Q  255 taggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  23806341 taggccagctgactgtgcattttcgctgatgtggcacg 23806378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 25903620 - 25903684
Alignment:
Q  270 tgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| || |||||||||||||| ||| ||||  ||||| ||||||||| |||||||||| ||||    
T  25903620 tgcatatttgctgatgtggcacgctgagtcacatttttctgatgacgtgacacgctgactatata 25903684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 28223689 - 28223595
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  28223689 gttttggaatac-ccctaggtcagctgactgtgcattttcgctgatgtggcacgctgaatcaccattttctgatgacgtggcacgctgactgtata 28223595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 6819314 - 6819388
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  6819314 cagctgactgtgcattttcgctgatgtggcacgctgaatcaccgttttctgatgacgtggcacgctgactgtata 6819388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 35009130 - 35009225
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||| ||||||||| |||||||||||||||||||||||  || | ||||||||| ||||||||||| |||||||||||||    
T  35009130 gttttggaataccccctaggccagctgactgtgcattttcgctgatgtggcacgcagagttaccgttttctgatgacgtggcgcgctgactgtata 35009225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 37402595 - 37402677
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||| ||||| |||||  |||||||||| |||||||||||||    
T  37402595 ccctaggtcagctgactgtgcattttcgctgatgtggcacgctgagtcaccattttctaatgacgtggcgcgctgactgtata 37402677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 6820021 - 6819947
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| ||||||||||||||||||||| | ||| |||| |||||| |||||||||||||||||||||||||    
T  6820021 cagctgactgtgcattttcgctgatgtggcatgctgagtcactgttttctgatgacgtggcacgctgactgtata 6819947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 28222816 - 28222910
Alignment:
Q  240 ttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||  |||||||  |||||||| || | |||||||||||||||||| ||| ||||| ||||| ||||||||| | |||||||||||||    
T  28222816 ttttggaataacccctaggctagctgactgtgtactttcgctgatgtggcacgctgagtcacctttttctgatgacgtgacgcgctgactgtata 28222910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 34901620 - 34901694
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | ||  ||||| ||||| ||||||||||| |||||||||||||    
T  34901620 cagctgactgtgcatttttgctgatgtggcatgctgcgtcacctttttcggatgacgtggcgcgctgactgtata 34901694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 39515058 - 39514984
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | ||  ||| | ||||||||||||||||| |||||||||||||    
T  39515058 cagctgactgtgcatttttgctgatgtggcatgctgcgtcatctttttcagatgacgtggcgcgctgactgtata 39514984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 34503339 - 34503410
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgt 331  Q
    ||||||||| |||||||| ||||| |||||||| ||| ||||| |||||  ||||| |||||||||||||||    
T  34503339 cagctgactatgcatttttgctgacgtggcacgctgagtcacctttttctaatgacatggcacgctgactgt 34503410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 31985132 - 31985205
Alignment:
Q  261 agctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| |||||||| | |||||||||| | |  |||||| ||||| ||||||||||| |||||||||||||    
T  31985132 agctgactgtgcatttttgttgatgtggcatgctccatcacctttttcggatgacgtggcgcgctgactgtata 31985205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 31986168 - 31986095
Alignment:
Q  261 agctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| |||||||| |||||||||||| | |   ||||| ||||| ||||||||||| |||||||||||||    
T  31986168 agctgactgtgcatttttgctgatgtggcatgctccgtcacctttttcggatgacgtggcgcgctgactgtata 31986095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 5873795 - 5873835
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  5873795 ccctaggccagctgactgtgcattttcgctgatgtggcacg 5873835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 34504125 - 34504063
Alignment:
Q  257 ggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggc 320  Q
    |||||||||||| ||||||| ||||||||||||| ||||  ||||| ||||| |||||||||||    
T  34504125 ggtcagctgactgtgcatttccgctgatgtggcatgttgtgtcacc-ttttctgatgacgtggc 34504063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 34902673 - 34902602
Alignment:
Q  263 ctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||| |||||||| |||||||||||| ||||  ||||  ||||  ||||||||||| |||||||||||||    
T  34902673 ctgactgtgcatttttgctgatgtggcatgttgcgtcactttttttggatgacgtggcgcgctgactgtata 34902602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 2269153 - 2269235
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||| |||||||||| |||||||  ||||||||||||  |||  ||||| ||||| ||||||||||||  |||||| ||||    
T  2269153 ccctagatcagctgactgtgcatttatgctgatgtggcattttgtgtcacctttttcggatgacgtggcatactgactatata 2269235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 334
Target Start/End: Complemental strand, 35009866 - 35009805
Alignment:
Q  273 attttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| |||||||||||||||| ||||  ||||| ||||| |||||| | ||||||||||    
T  35009866 attttcgttgatgtggcacgttgagtcacatttttctgatgatgtggcatgttgactgtata 35009805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 37403447 - 37403366
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccc-taggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||||||||||||||||        ||||||||| || ||| |||| ||||||||| ||||||||| |||||||||||||    
T  37403447 cagattccgtccttgtaaaatttttttgttttggaaaacccccctaggccagctgactgtgcattttcactgatgtggcacg 37403366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 5874665 - 5874625
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    ||||||| ||||||||| |||||||||| ||||||||||||    
T  5874665 ccctagggcagctgactgtgcattttcgttgatgtggcacg 5874625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 1873671 - 1873577
Alignment:
Q  240 ttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||| ||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  1873671 ttttggaataccccctaggccagctgactgtgcattttcgctgatgtggcacgctgagtcaccgttttctgatgacgtggcacgctgactgtata 1873577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 15481586 - 15481681
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| || |||||||||| ||| ||||||||||||||||||||||| ||| ||||||||||  |||||| |||| |||||||||||||    
T  15481586 gttttggaataccccttaggtcagctaactgtgcattttcgctgatgtggcacgctgagtcaccgttttttgatgacatggcccgctgactgtata 15481681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 18532881 - 18532786
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||||||||||| |||||||| ||||    
T  18532881 gttttggaataccccttaggccagctgactgtgcattttcgctgatgtggcacactgagtcaccgttttctgatgacgtggcgcgctgactatata 18532786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 16647820 - 16647732
Alignment:
Q  246 aatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| || |||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||  ||||||||||| ||||||| |||||    
T  16647820 aataccccataggccagctgactgtgcattttcgctgatgtggcacgctgagtcaccgttttatgatgacgtggcgcgctgaccgtata 16647732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 10746337 - 10746411
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||  ||||||||||||||||||||||| ||  ||||| ||||| |||||||||||||||||||||||||    
T  10746337 cagctgaccgtgcattttcgctgatgtggcacgctgcgtcacctttttcggatgacgtggcacgctgactgtata 10746411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 15809323 - 15809241
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||  |||||||| |||||||| ||||||||| |||| ||| ||||||||||| ||||||||||||| || ||||||||    
T  15809323 ccctaggctagctgactgtgcatttttgctgatgtgacacgctgagtcaccgttttctgatgacgtggcacactaactgtata 15809241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 16647152 - 16647248
Alignment:
Q  239 gttttggaata-caccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||| | ||| ||| ||||||||| || ||||||||| ||||||||||  || ||||| ||||| ||||||||||  |||||||||||||    
T  16647152 gttttggaataacccccaaggccagctgactgtgtattttcgctaatgtggcacgcagagtcacctttttctgatgacgtggagcgctgactgtata 16647248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 331
Target Start/End: Original strand, 28461184 - 28461252
Alignment:
Q  263 ctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgt 331  Q
    |||||| |||||||| |||||||||||| ||||  ||||| ||||  ||||||||||||||||||||||    
T  28461184 ctgactgtgcatttttgctgatgtggcatgttgtgtcaccttttttggatgacgtggcacgctgactgt 28461252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 20474007 - 20473912
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| | ||||| |||| || | || |||||||||||||||||| ||||| ||||  ||||| ||||| ||||| | |||||||||||    
T  20474007 gttttggaataccctctaggccagccgattgtgtattttcgctgatgtggcatgttgagtcacatttttctgatgatgtggcgctctgactgtata 20473912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 33868571 - 33868665
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| |||||   ||||||||  || |||||||||||||||||||| ||| ||||| ||||  ||||||||||  |||||||||||||    
T  33868571 gttttggaataccccctaaaccagctgacagtgtattttcgctgatgtggcacgctgagtcacc-ttttatgatgacgtggtgcgctgactgtata 33868665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 15748948 - 15748874
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| | |||||| ||| |||||||||| ||  ||||| ||||| ||||||||||| |||||||||||||    
T  15748948 cagctgactgtacatttttgctaatgtggcacgctgcgtcacctttttcggatgacgtggcgcgctgactgtata 15748874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 22467101 - 22467175
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | ||  ||||| ||||  ||||||||||| |||||||||||||    
T  22467101 cagctgactgtgcatttttgctgatgtggcatgctgtgtcaccttttttggatgacgtggcgcgctgactgtata 22467175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 28462431 - 28462357
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| ||||||||||||   ||  ||||| ||||| ||||||||||| |||||||||||||    
T  28462431 cagctgactgtgcatttttgctgatgtggcatactgcgtcacctttttcggatgacgtggcgcgctgactgtata 28462357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 45323833 - 45323761
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgtttt-cagatgacgtggcacgctgactgt 331  Q
    ||||||||| |||||||| ||||| |||||||| ||| ||||| |||| | ||||||||||| ||||||||||    
T  45323833 cagctgactgtgcatttttgctgacgtggcacgctgagtcaccttttttctgatgacgtggcgcgctgactgt 45323761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 15747847 - 15747942
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||   |||||||| |||||||| |||||||||||| ||||  ||||| ||||  |||||||| || ||| |||||||||    
T  15747847 gttttggaaaaccccctagactagctgactgtgcatttttgctgatgtggcatgttgtgtcaccctttttggatgacgttgcgcgccgactgtata 15747942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 22468187 - 22468092
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  |||| |||| |||||||| |||||||||||| | ||  ||||| ||||  ||||||||||| | |||||||||||    
T  22468187 gttttggaaaaccccctagaccagcagactgtgcatttttgctgatgtggcatgctgcgtcaccttttttggatgacgtggcgcactgactgtata 22468092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 22474408 - 22474313
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  |||| |||| |||||||| |||||||||||| | ||  ||||| ||||  ||||||||||| | |||||||||||    
T  22474408 gttttggaaaaccccctagaccagcagactgtgcatttttgctgatgtggcatgctgcgtcaccttttttggatgacgtggcgcactgactgtata 22474313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 22292315 - 22292361
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatg 285  Q
    |||||||||||| ||||||| ||||||||| |||| |||||||||||    
T  22292315 gttttggaataccccctaggccagctgactgtgcactttcgctgatg 22292361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 44242295 - 44242221
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | |   ||||| ||||  |||||||||||| ||||||||||||    
T  44242295 cagctgactatgcatttttgctgatgtggcatgctccgtcaccttttttggatgacgtggcaggctgactgtata 44242221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 4024984 - 4025021
Alignment:
Q  255 taggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  4024984 taggccagctgactgtgcattttcgctgatgtggcacg 4025021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 34067971 - 34067884
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctga 327  Q
    |||||| |||||| | ||||||| |||||| |||||| |  ||||||||||||| ||| ||||| ||||| ||||| ||||| ||||||    
T  34067971 gttttgaaatacatcgtaggtcatctgactgtgcattata-ctgatgtggcacgctgagtcacctttttctgatgatgtggcgcgctga 34067884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 213 - 334
Target Start/End: Original strand, 11359527 - 11359648
Alignment:
Q  213 agattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagat 312  Q
    ||||||||||||||||||        |||||| || || |||||| |||||||||| ||||||||||||||||||||||| ||| ||||||||||| |||    
T  11359527 agattccgtccttgtaaaaattttttgttttgaaaaaccccctagctcagctgactgtgcattttcgctgatgtggcacgctgagtcaccgttttctgat 11359626  T
Q  313 gacgtggcacgctgactgtata 334  Q
    ||||||||||||||||||||||    
T  11359627 gacgtggcacgctgactgtata 11359648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 334
Target Start/End: Complemental strand, 2305492 - 2305370
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcaga 311  Q
    |||||||||||||||||||        ||||||||| || ||||||| ||||||||| ||||||||||||||| ||||||| ||| ||||| ||||  ||    
T  2305492 cagattccgtccttgtaaattttttttgttttggaaaaccccctaggccagctgactgtgcattttcgctgatttggcacgctgagtcaccattttttga 2305393  T
Q  312 tgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||||||||    
T  2305392 tgacgtggcgcgctgactgtata 2305370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 11360334 - 11360213
Alignment:
Q  213 agattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagat 312  Q
    ||||||||||||||||||        |||||| || || ||||||  ||||||| | ||||||||||||||||||||||| ||| ||| ||||||| |||    
T  11360334 agattccgtccttgtaaaaaaattttgttttgaaaaaccccctagcccagctgaatgtgcattttcgctgatgtggcacgctgagtcaacgttttctgat 11360235  T
Q  313 gacgtggcacgctgactgtata 334  Q
    ||||||||||||||||||||||    
T  11360234 gacgtggcacgctgactgtata 11360213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 18027967 - 18027873
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||||||| || |||||| || |||||| ||||||||||||| ||||||| | || || |||||||||||||||||||||||||    
T  18027967 gttttggaatac-ccctaggccaactgactgtgtattttcactgatgtggcacgctgaatcatctttctctgatgacgtggcacgctgactgtata 18027873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 46207913 - 46207831
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| ||||||||| |||||||||||| |||||||||| ||| ||||| ||||| ||||||||||| || ||||||||||    
T  46207913 ccctagggcagctgactgtgcattttcgctaatgtggcacgctgattcaccattttctgatgacgtggcgcgttgactgtata 46207831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 51545167 - 51545075
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgt 331  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||||||||| ||||  | ||| ||||| |||||||||| |||||| ||||    
T  51545167 gttttggaataccccataggccagctgactatgcattttcgctgatgtggcatgttgcgttacctttttctgatgacgtggtacgctgtctgt 51545075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 18141056 - 18141130
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | || |||||| ||||  |||||||||||||||||||||||||    
T  18141056 cagctgactgtgcatttttgctgatgtggcatgctgcatcaccctttttggatgacgtggcacgctgactgtata 18141130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 25309124 - 25309032
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgt 331  Q
    ||||| |||||| |||| ||  |||||||| |||||||| |||||||||||||| ||| ||||| ||||| ||||| ||||| ||||||||||    
T  25309124 gttttagaataccccctgggctagctgactatgcatttttgctgatgtggcacgctgagtcacctttttctgatgatgtggcgcgctgactgt 25309032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 54567705 - 54567610
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||||||||| |||||||| |||||||||||| | ||  ||||| ||||  ||||||||||| |||||||||||||    
T  54567705 gttttggaaaaccccctagaccagctgactgtgcatttttgctgatgtggcatgctgtgtcaccttttttggatgacgtggcgcgctgactgtata 54567610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 29184920 - 29184846
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||||| ||||| ||||| ||||| |||||||||||||    
T  29184920 cagctgactgtgcatttttgctgatgtggcatgttgcgtcacctttttcggatgaagtggcgcgctgactgtata 29184846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 34061457 - 34061537
Alignment:
Q  254 ctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| ||||||||| |||||||| |||||||||||| | || |||||  ||||  |||||||||||| ||||||||||||    
T  34061457 ctaggccagctgactgtgcatttttgctgatgtggcatgctgcatcacaattttatgatgacgtggcatgctgactgtata 34061537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 48044667 - 48044592
Alignment:
Q  260 cagctgactctgcattttcgctga-tgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| ||| |||||| ||| ||||||||| ||| ||||||||||| ||||||||||| || ||||||||||    
T  48044667 cagctgactgtgccttttcgttgaatgtggcacgctgagtcaccgttttctgatgacgtggcgcgttgactgtata 48044592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 38344320 - 38344246
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| ||||||||| || | ||  ||||| ||||| ||||||||||| |||||||||||||    
T  38344320 cagctgactgtgcatttttgctgatgtgacatgctgcgtcacctttttcggatgacgtggcgcgctgactgtata 38344246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 46207182 - 46207262
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||||||||||||||||        |||||| || || || |||||||||||||| ||||||||||| |||||||||||    
T  46207182 cagattccgtccttgtaaaatttttttgttttgaaaaaccccttaggtcagctgactgtgcattttcgcagatgtggcacg 46207262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 4217773 - 4217868
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || || |||  ||||| ||| |||||||| |||||||||||| | ||  ||||  ||||  |||||||||||||||||||||||||    
T  4217773 gttttggaaaaccccttagaccagctaactgtgcatttttgctgatgtggcatgctgcgtcactttttttggatgacgtggcacgctgactgtata 4217868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 31173546 - 31173451
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||||||||| |||||||| || ||||||||| | ||  ||||| ||||  ||||||||||| ||||||| |||||    
T  31173546 gttttggaaaaccccctagaccagctgactgtgcatttttgcagatgtggcatgctgcgtcaccttttttggatgacgtggcgcgctgaccgtata 31173451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 272 - 334
Target Start/End: Original strand, 43112156 - 43112218
Alignment:
Q  272 cattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||| |||||||||||| | || |||||| ||||| |||||||||||  ||||||||||||    
T  43112156 catttttgctgatgtggcatgctgcatcacctttttcggatgacgtggcgtgctgactgtata 43112218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 38243641 - 38243569
Alignment:
Q  262 gctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| |||||||| ||| |||||||| | ||  ||||| ||||| |||||| |||| |||||||||||||    
T  38243641 gctgactgtgcatttttgcttatgtggcatgatgcgtcacctttttctgatgacctggcgcgctgactgtata 38243569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 212 - 334
Target Start/End: Original strand, 31677717 - 31677839
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcaga 311  Q
    |||||||||||||||||||        |||||||||||| ||||||  ||||||||| || |||||| ||||||||||||| ||| ||||| ||||| ||    
T  31677717 cagattccgtccttgtaaattttttttgttttggaataccccctagaccagctgactgtgtattttcactgatgtggcacgctgagtcacctttttctga 31677816  T
Q  312 tgacgtggcacgctgactgtata 334  Q
    |||||||||||||||||||||||    
T  31677817 tgacgtggcacgctgactgtata 31677839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 334
Target Start/End: Original strand, 47024564 - 47024686
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcaga 311  Q
    |||||||||||||||||||        ||||||||| || | ||||| ||||||||| ||||||||||| ||||||| | | ||| ||||||||||| ||    
T  47024564 cagattccgtccttgtaaaaaaaatttgttttggaaaacccactaggccagctgactgtgcattttcgcagatgtggtatgctgagtcaccgttttctga 47024663  T
Q  312 tgacgtggcacgctgactgtata 334  Q
    |||||||||||||||||||||||    
T  47024664 tgacgtggcacgctgactgtata 47024686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 332
Target Start/End: Complemental strand, 49201331 - 49201251
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgta 332  Q
    ||||||| ||||||||| ||||||||||||||||||||||| ||| ||||||||||  ||||||||||| |||||||||||    
T  49201331 ccctaggccagctgactgtgcattttcgctgatgtggcacgctgagtcaccgttttatgatgacgtggcgcgctgactgta 49201251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 44754546 - 44754467
Alignment:
Q  255 taggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||| ||||||||| ||||||||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||||    
T  44754546 taggccagctgactgtgcattttcgctgatgtggcacgctgagtcaccattttctgatgacgtggcgcgctgactgtata 44754467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 49200887 - 49200981
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||| | ||||||||| ||||||||||||||||||||||| ||| ||||||||||| ||||||||||| ||||| |||||||    
T  49200887 gttttggaaaac-ccctaagccagctgactgtgcattttcgctgatgtggcacgctgagtcaccgttttctgatgacgtggcgcgctggctgtata 49200981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 24546570 - 24546496
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||    
T  24546570 cagctgactgtgcatttttgctgatgtggcatgttgcatcacctttttcagatgacgtggcgcgctgactgtata 24546496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 26943595 - 26943691
Alignment:
Q  239 gttttggaatacac-cctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| | |||| |||||  |||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||  |||||||||||||    
T  26943595 gttttggaataccctcctatgtcagtcgactgtgcattttcgctgatgtggcacgttgagtcaacgttttctgatgacgtggtgcgctgactgtata 26943691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 51471141 - 51471046
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| |||||| ||||||| |||||||||||||||||| |||||||||||| | ||  ||||| ||||| ||||||||||  |||||||||||||    
T  51471141 gttttagaataccccctagggcagctgactctgcatttttgctgatgtggcatgctgtgtcacctttttcggatgacgtggtgcgctgactgtata 51471046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 25601864 - 25601782
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| |||||||||  |||||||||||||||||||||| ||| ||||| ||||| ||||||||||| ||||||| |||||    
T  25601864 ccctaggccagctgactgggcattttcgctgatgtggcacgctgagtcaccattttctgatgacgtggcgcgctgacagtata 25601782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 47221008 - 47221103
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||   |||| ||| ||||||||||||||||| |||| |||| ||||||||||| ||||||||||| |||||||| ||||    
T  47221008 gttttggaaaaccccctagcctagctaactgtgcattttcgctgatgtcgcacattgagtcaccgttttctgatgacgtggcgcgctgactatata 47221103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 13903363 - 13903269
Alignment:
Q  240 ttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| || ||| ||| ||||||||| |||||||| |||||||||||| ||||  ||||| ||||| ||||||||||| || ||||||||||    
T  13903363 ttttggaaaaccccccaggccagctgactgtgcatttttgctgatgtggcatgttgcgtcacctttttcggatgacgtggcgcgttgactgtata 13903269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 28414858 - 28414930
Alignment:
Q  262 gctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| |||||||| |||||||||||| | ||  ||||| ||||| |||||||||||||||||||||||||    
T  28414858 gctgactgtgcatttttgctgatgtggcatgctgtgtcacctttttctgatgacgtggcacgctgactgtata 28414930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 34932496 - 34932560
Alignment:
Q  270 tgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||||||||||||| | ||| ||||| ||||| ||||||||||| |||||||||||||    
T  34932496 tgcattttcgctgatgtggcatgctgagtcaccattttctgatgacgtggcgcgctgactgtata 34932560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 47145268 - 47145342
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||||| ||||  |||||||||||||| ||||||||||    
T  47145268 cagctgactgtgcatttttgctgatgtggcatgttgcgtcaccttttttggatgacgtggcacgttgactgtata 47145342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 47221883 - 47221809
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||| ||||| ||  ||||||||||| ||||||||| | |||||||||||||    
T  47221883 cagctgactgtgcatttttgctgatgtagcacgctgggtcaccgttttctgatgacgtgacgcgctgactgtata 47221809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 388039 - 388134
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| |||||| || |||| ||||||||| | ||||||||||||||||| |  |||  ||| | ||||| |||||||||| ||||||||||||||    
T  388039 gttttagaataccccttaggccagctgactgtacattttcgctgatgtggtattttgcgtcatctttttctgatgacgtggtacgctgactgtata 388134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 16786108 - 16786017
Alignment:
Q  243 tggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| || ||||||| ||| ||||| |||||||| ||| |||||||| | || |||||| ||||| ||||| ||||| |||||||||||||    
T  16786108 tggaaaaccccctaggccagttgactgtgcatttttgctaatgtggcatgatgcatcacctttttcggatgaggtggcgcgctgactgtata 16786017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 26944349 - 26944255
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||| |||||  |||||||||||||||| || || ||||||||| ||||||| ||| ||||| ||||| |||||| |||  |||||||||||||    
T  26944349 gttttgtaatacctcctaggtcagctgactgtgtatgttcgctgat-tggcacgctgagtcacctttttctgatgacatggagcgctgactgtata 26944255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 334
Target Start/End: Complemental strand, 7780212 - 7780118
Alignment:
Q  240 ttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| || || ||||  ||||||||||| |||||||  ||||||||| |||| |||||  ||||  ||||||||||| |||||||||||||    
T  7780212 ttttggaaaaccccataggctagctgactctgtattttcgtagatgtggcatgttgcatcactttttttggatgacgtggcgcgctgactgtata 7780118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 48716440 - 48716514
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||||| ||| | ||||| ||||| |||||||||||||    
T  48716440 cagctgactatgcatttttgctgatgtggcatgttgcgtcaccttttacggatgatgtggcgcgctgactgtata 48716514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 44753367 - 44753448
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccc-taggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||||||||||||||||        ||||||||| || ||| |||| ||||||||| |||||||||||||||||||||||    
T  44753367 cagattccgtccttgtaaattttttttgttttggaaaacccccctaggccagctgactgtgcattttcgctgatgtggcacg 44753448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 52596121 - 52596080
Alignment:
Q  8 ttttcaacttcattagcaacacgaagaatgggtgcaatttca 49  Q
    |||||||| ||||||||||||||||||||||| |||||||||    
T  52596121 ttttcaacctcattagcaacacgaagaatgggagcaatttca 52596080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Original strand, 22591400 - 22591472
Alignment:
Q  262 gctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| |||||||| ||| |||||||| | ||  ||||| ||||| ||||||||||| |||||||||||||    
T  22591400 gctgactgtgcatttttgctaatgtggcatgatgcgtcacctttttctgatgacgtggcgcgctgactgtata 22591472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 32130740 - 32130836
Alignment:
Q  239 gttttggaatacaccc-taggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||| |||  ||||||||| |||||||| ||||||||| || ||||  ||||| ||||| ||||||||||| | ||||| |||||    
T  32130740 gttttggaaaacacccgtagaccagctgactgtgcatttttgctgatgtgacatgttgtgtcacctttttcggatgacgtggcgcactgacggtata 32130836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 334
Target Start/End: Complemental strand, 45833114 - 45833042
Alignment:
Q  262 gctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||  ||||||| |||||||||||| ||||  ||||| ||||| ||||||||| | |||||||||||||    
T  45833114 gctgactaggcatttttgctgatgtggcatgttgtgtcacctttttctgatgacgtgtcgcgctgactgtata 45833042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 4415134 - 4415039
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| |||||| ||||| | ||||||||| |||||||| ||||||||| || ||||  | ||| ||||  ||||||||||| | |||||||||||    
T  4415134 gttttagaataccccctatgacagctgactgtgcatttttgctgatgtgacatgttgtgttaccttttttggatgacgtggcgcactgactgtata 4415039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 31645330 - 31645425
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||||||||| |||||||| ||||||||| || | ||  ||||| ||||  ||||||||||| | |||||||||||    
T  31645330 gttttggaaaaccccctagaccagctgactgtgcatttttgctgatgtgacatgctgcgtcaccttttttggatgacgtggcgcactgactgtata 31645425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 334
Target Start/End: Complemental strand, 1826369 - 1826299
Alignment:
Q  264 tgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| |||||||| |||||||||||| ||||  ||||| ||| | ||||| ||||| |||||||||||||    
T  1826369 tgactgtgcatttttgctgatgtggcatgttgtgtcaccttttaccgatgatgtggcgcgctgactgtata 1826299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 24545575 - 24545649
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | ||  ||||| ||||  ||||||||||| || ||||||||||    
T  24545575 cagctgactgtgcatttttgctgatgtggcatgctgcgtcaccttttttggatgacgtggcgcgatgactgtata 24545649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 47146326 - 47146252
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| ||||||||| || ||||  ||| | ||||| ||||| ||||| |||||||||||||    
T  47146326 cagctgactgtgcatttttgctgatgtgacatgttgcgtcatctttttcggatgatgtggcgcgctgactgtata 47146252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 48717254 - 48717181
Alignment:
Q  261 agctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| | |||||| |||||||||||| | ||  ||||  ||||  |||||||||||||||||||||||||    
T  48717254 agctgactgtacatttttgctgatgtggcatgatgtgtcacattttttggatgacgtggcacgctgactgtata 48717181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 25601038 - 25601078
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    ||||||| ||||||||| |||||||||||||| ||||||||    
T  25601038 ccctaggccagctgactgtgcattttcgctgaggtggcacg 25601078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 175 - 334
Target Start/End: Original strand, 3119352 - 3119512
Alignment:
Q  175 atcacttttggttttctcccatgtaaannnnnnnnggcagattccgtccttgtaaannnnnnnngttttggaatacaccc-taggtcagctgactctgca 273  Q
    |||||||||||||||||||| ||| ||        | |||||||||||||||||||        ||||||||| || ||| |||| ||||||||| ||||    
T  3119352 atcacttttggttttctcccctgtgaaatttttttgtcagattccgtccttgtaaaaattttttgttttggaaaacccccctaggccagctgactgtgca 3119451  T
Q  274 ttttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||||||||||| ||| ||||| ||||| ||||||||||| || ||||||||||    
T  3119452 ttttcgctgatgtggcacgctgagtcaccattttctgatgacgtggcgcgttgactgtata 3119512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 212 - 326
Target Start/End: Original strand, 30408656 - 30408770
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcaga 311  Q
    |||||||||||||||||||        ||||||||| || ||||||| ||||||||| ||||||||||||||||||||| | ||| ||||| ||||||||    
T  30408656 cagattccgtccttgtaaaatttttttgttttggaaaaccccctaggccagctgactgtgcattttcgctgatgtggcatgctgagtcaccattttcaga 30408755  T
Q  312 tgacgtggcacgctg 326  Q
    | |||| || |||||    
T  30408756 taacgtagcgcgctg 30408770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 331
Target Start/End: Complemental strand, 12239925 - 12239769
Alignment:
Q  176 tcacttttggttttctcccatgtaaannnnnnnnggcagattccgtccttgtaaannnnnnnngttttggaatacaccc-taggtcagctgactctgcat 274  Q
    ||||||||||||||||||| ||||||        | ||||||||||||||||||         ||||||||| || ||| |||| ||||||||| |||||    
T  12239925 tcacttttggttttctcccctgtaaattttttttgtcagattccgtccttgtaatttttttttgttttggaaaacccccctaggccagctgactgtgcat 12239826  T
Q  275 tttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgt 331  Q
    || ||||||||||||||| ||| ||||| ||||| |||||||||||  |||||||||    
T  12239825 ttccgctgatgtggcacggtgagtcaccattttctgatgacgtggcgtgctgactgt 12239769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 3063444 - 3063349
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||||||||| |||||||| |||||||||||| | ||  ||||| ||||| ||||||||||| |||||||||||||    
T  3063444 gttttggaaaaccccctagaccagctgactgtgcatttttgctgatgtggcatgctgcgtcacctttttcggatgacgtggcgcgctgactgtata 3063349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 18983964 - 18983912
Alignment:
Q  240 ttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  18983964 ttttggaaaaccccctaggtcagctgactgtgcattttcgctgatgtggcacg 18983912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 22365943 - 22366007
Alignment:
Q  254 ctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtg 318  Q
    ||||| || |||||| ||||||||||||||||||||||| ||| ||||||||||| |||||||||    
T  22365943 ctaggccaactgactgtgcattttcgctgatgtggcacgctgagtcaccgttttctgatgacgtg 22366007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 255 - 334
Target Start/End: Original strand, 29453816 - 29453895
Alignment:
Q  255 taggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||| ||||||||| ||||||||||||||||||||||| ||| ||||  ||||| ||| | ||||| |||||||||||||    
T  29453816 taggccagctgactgtgcattttcgctgatgtggcacgctgagtcacgattttctgataatgtggcgcgctgactgtata 29453895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 18983027 - 18983109
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| ||||||||| ||||||||||||||||||||||  ||| || || ||||| ||||| |||||| | ||||||||||    
T  18983027 ccctaggccagctgactgtgcattttcgctgatgtggcacactgagtcgccattttctgatgatgtggcaggttgactgtata 18983109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 25386477 - 25386403
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||| |||||||| ||||||||  ||||| ||||| |||||||| ||||||||||||||||    
T  25386477 cagctgactgtgtatttttgctgatgtagcacgttgtgtcacctttttcggatgacgttgcacgctgactgtata 25386403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 30409630 - 30409577
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    ||||||||| || ||||||| ||||||||| |||||||||||||||||||||||    
T  30409630 gttttggaaaaccccctaggccagctgactgtgcattttcgctgatgtggcacg 30409577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 26470216 - 26470121
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||| ||||| |||||||| |||||||||||| | ||  ||||| ||||  ||||||||||| |||||||||||||    
T  26470216 gttttggaaaaccccctagaccagttgactgtgcatttttgctgatgtggcatgctgcgtcaccttttttggatgacgtggcgcgctgactgtata 26470121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 3062307 - 3062381
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  |||||  |||  ||||||||||| |||||||||||||    
T  3062307 cagctgactgtgcatttttgctgatgtggcatgttgtgtcacccattttggatgacgtggcgcgctgactgtata 3062381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 28189516 - 28189604
Alignment:
Q  245 gaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||||| ||  ||| |||||||||| |||||||||||||| ||| ||||| |||| || ||| |||| ||| ||||||||||    
T  28189516 gaatacaccctaggccatatgaatctgcatttttgctgatgtggcacgctgagtcaccttttttag-tgatgtggtacgttgactgtata 28189604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 3120297 - 3120244
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||| || || ||||||| |||| |||| |||||||||||||||||||||||    
T  3120297 gttttgaaaaaccccctaggccagcggactgtgcattttcgctgatgtggcacg 3120244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 334
Target Start/End: Original strand, 26469131 - 26469196
Alignment:
Q  269 ctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||||||| | ||  ||||| ||||  ||||||| |||||||||||||||||    
T  26469131 ctgcatttttgctgatgtggcatgctgcgtcaccttttttggatgacgaggcacgctgactgtata 26469196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 29454675 - 29454622
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||| || || ||||||| ||||||||| |||||||||| ||||||||||||    
T  29454675 gttttgaaaaaccccctaggccagctgactgtgcattttcgttgatgtggcacg 29454622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 32614471 - 32614407
Alignment:
Q  270 tgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| | |||||||||| | || |||||| ||||| ||||| ||||| |||||||||||||    
T  32614471 tgcatttttgttgatgtggcatgatgcatcacctttttcggatgaggtggcgcgctgactgtata 32614407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 11466662 - 11466566
Alignment:
Q  239 gttttggaatacac-cctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| | |||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||| ||| ||||||| ||||||| |||||    
T  11466662 gttttggaataccctcctaggtcagctgactgtgcattttcgctgatgtggcacactgagtcaccgttttctgatcacgtggcgcgctgacagtata 11466566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 333
Target Start/End: Complemental strand, 23932394 - 23932322
Alignment:
Q  261 agctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtat 333  Q
    |||||||| ||||||||||||||||||||| | ||| ||||||||||| ||||||||||| ||||||||||||    
T  23932394 agctgactgtgcattttcgctgatgtggcatgctgagtcaccgttttctgatgacgtggcgcgctgactgtat 23932322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 5700624 - 5700529
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  |||||||||  ||||||||||| |||||||||  ||| ||||| ||||| |||||||||||||||||||||||||    
T  5700624 gttttggaaaaccccctagaccagctgactgcgcattttcgcttatgtggcacactgagtcaccattttctgatgacgtggcacgctgactgtata 5700529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 253 - 334
Target Start/End: Original strand, 11466000 - 11466081
Alignment:
Q  253 cctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||| ||||||||| || |||||||||||||||||| | ||| ||||| ||||| ||||||||||| |||||||||||||    
T  11466000 cctaggccagctgactatgtattttcgctgatgtggcatgctgagtcacctttttctgatgacgtggcgcgctgactgtata 11466081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 32145871 - 32145797
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||||| ||||||||||||||||| | |||||||||||    
T  32145871 cagctgactgtgcatttttgctgatgtggcatgttgcgtcacctttttcagatgacgtggcgccctgactgtata 32145797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 32144966 - 32145054
Alignment:
Q  246 aatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| ||||||| ||||||||| |||||||| |||||||||||| | ||  ||||| ||||| ||||||||||  |||||||||||||    
T  32144966 aataccccctagggcagctgactgtgcatttttgctgatgtggcatgctgtgtcacctttttcggatgacgtggtgcgctgactgtata 32145054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 28820516 - 28820421
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||||||||  |||||||| |||||||||||| ||||  ||||| ||||  ||||||||||| |||||||||||||    
T  28820516 gttttggaaaaccccctagaccagctgacggtgcatttttgctgatgtggcatgttgtgtcaccctttttggatgacgtggcgcgctgactgtata 28820421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 9750565 - 9750639
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||||| ||||| |||||| |||| |||||||||||||    
T  9750565 cagctgactgtgcatttttgctgatgtggcatgttgcgtcacctttttcggatgacatggcgcgctgactgtata 9750639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 4602945 - 4602872
Alignment:
Q  261 agctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| |||||||| |||||||||||| |||| |||| | ||||  ||||||||||| |||||||||||||    
T  4602945 agctgactgtgcatttttgctgatgtggcatgttgcatcatcttttttggatgacgtggcgcgctgactgtata 4602872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 9751616 - 9751542
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||| | ||||  ||||||||||| |||||||||||||    
T  9751616 cagctgactgtgcatttttgctgatgtggcatgttgtgtcagcctttttggatgacgtggcgcgctgactgtata 9751542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 13947845 - 13947909
Alignment:
Q  270 tgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||||  |||||||| ||| ||| | ||||| ||||||||||||||||||| |||||    
T  13947845 tgcattttcgctggggtggcacgctgagtcatctttttctgatgacgtggcacgctgacagtata 13947909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 19600091 - 19600165
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||| |||| |||||||| ||| |||||||| ||||  ||||| ||||  ||||||||||| |||||||||||||    
T  19600091 cagccgactgtgcatttttgctaatgtggcatgttgcttcaccctttttggatgacgtggcgcgctgactgtata 19600165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 5699851 - 5699904
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||| || || ||||||| ||||||||| |||||||| ||||||||||||||    
T  5699851 gttttgaaaaaccccctaggccagctgactgtgcatttttgctgatgtggcacg 5699904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 19601227 - 19601146
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggc 320  Q
    ||||||||| || ||||||  ||||||||| |||||||| | |||||||||| | ||  ||||| ||||| |||||||||||    
T  19601227 gttttggaaaaccccctagaccagctgactgtgcatttttgttgatgtggcatgatgcgtcacctttttcggatgacgtggc 19601146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 29320236 - 29320304
Alignment:
Q  266 actctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| |||||||||||| | ||  || || ||||  ||||||||||| |||||||||||||    
T  29320236 actctgcatttttgctgatgtggcatgctgcgtcgccctttttggatgacgtggcgcgctgactgtata 29320304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 283
Target Start/End: Complemental strand, 34407853 - 34407809
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctga 283  Q
    |||||||||||| ||||||| ||||||||| || |||||||||||    
T  34407853 gttttggaataccccctaggccagctgactgtgtattttcgctga 34407809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 213 - 334
Target Start/End: Complemental strand, 16056 - 15935
Alignment:
Q  213 agattccgtccttgtaaannnnnnnngttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagat 312  Q
    ||||||||||||||||||        ||||||||| || ||||||| || |||||| ||||||||||||||||||||||| ||| ||||| ||||| |||    
T  16056 agattccgtccttgtaaatattttttgttttggaaaaccccctaggccaactgactgtgcattttcgctgatgtggcacgctgagtcaccattttctgat 15957  T
Q  313 gacgtggcacgctgactgtata 334  Q
    || |||||||| |||| |||||    
T  15956 gatgtggcacgttgaccgtata 15935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 292
Target Start/End: Original strand, 14940 - 14980
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  14940 ccctaggccagctgactgtgcattttcgctgatgtggcacg 14980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 212 - 334
Target Start/End: Original strand, 54353434 - 54353557
Alignment:
Q  212 cagattccgtccttgtaaannnnnnnngttttggaatacaccc-taggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcag 310  Q
    |||||||||||||||||||        ||||||||| || ||| || | ||||||||| |||| |||||||||||||||||| ||| ||||||||||| |    
T  54353434 cagattccgtccttgtaaaaaaaatttgttttggaaaacccccctaagccagctgactatgcactttcgctgatgtggcacgctgagtcaccgttttctg 54353533  T
Q  311 atgacgtggcacgctgactgtata 334  Q
    |||||||||| |||||| ||||||    
T  54353534 atgacgtggcgcgctgagtgtata 54353557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 41332698 - 41332618
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggc 320  Q
    |||||||||||| ||||||| ||||||||| ||||||||||||||||||||||  ||| ||| ||||||| |||||||||||    
T  41332698 gttttggaatac-ccctaggccagctgactgtgcattttcgctgatgtggcacactgagtcatcgttttctgatgacgtggc 41332618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 254 - 334
Target Start/End: Original strand, 47765364 - 47765444
Alignment:
Q  254 ctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| ||||||||| ||||||||||||||||||||||| ||| ||||| ||||| |||||||| || | |||||||||||    
T  47765364 ctaggccagctgactgtgcattttcgctgatgtggcacgctgagtcaccattttctgatgacgtcgcgcactgactgtata 47765444  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 334
Target Start/End: Original strand, 49552138 - 49552202
Alignment:
Q  270 tgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||||||||| ||| ||||  |||||||||| |||||||||||||||||||||||||    
T  49552138 tgcattttcgctgatgtgacacattgagacaccgttttctgatgacgtggcacgctgactgtata 49552202  T

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Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 3673319 - 3673224
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||||  |||||| ||||||||| ||||||||||||||||| ||| | |   ||| ||||||| ||||||||||| |||||||||||||    
T  3673319 gttttggaatacctcctaggccagctgactgtgcattttcgctgatgtagcatgctaggtcatcgttttctgatgacgtggcgcgctgactgtata 3673224  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 20613854 - 20613759
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || |||||||  |||||||| || |||||||||||||||||| | ||| ||||| ||||| ||||||||||| |||||| ||||||    
T  20613854 gttttggaaaaccccctaggctagctgactgtgtattttcgctgatgtggcatgatgagtcaccattttctgatgacgtggcgcgctgaatgtata 20613759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 550791 - 550865
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | ||  ||||| ||||||||||||||||| |||||||||||||    
T  550791 cagctgactgtgcatttttgctgatgtggcatgctgcgtcacctttttcagatgacgtggcgcgctgactgtata 550865  T

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Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 328
Target Start/End: Original strand, 41331867 - 41331956
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgac 328  Q
    |||||||||  | |||||| |||||||||| ||||||||||||||||||||||| ||| ||||| ||||  |||||||||| | ||||||    
T  41331867 gttttggaaacccccctagatcagctgactgtgcattttcgctgatgtggcacgctgagtcacctttttttgatgacgtggtatgctgac 41331956  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 12352419 - 12352324
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| |||||| ||||||| || |||||| || |||||||||||||||||| | ||  ||||| ||||| |||||| ||||| ||||||||||||    
T  12352419 gttttagaataccccctaggccaactgactgtgaattttcgctgatgtggcatgctgcgtcacctttttctgatgacatggcatgctgactgtata 12352324  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 263 - 334
Target Start/End: Complemental strand, 43860848 - 43860777
Alignment:
Q  263 ctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||| ||||||||||||||||||||| | ||| ||||| ||||| ||||||||| |||||| ||||||||    
T  43860848 ctgactgtgcattttcgctgatgtggcatgctgagtcacctttttctgatgacgtgacacgctaactgtata 43860777  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 48029507 - 48029602
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || |||||||  |||||||| |||||||| ||||||| |||| ||||  ||||| ||||  ||||||||||| |||||||||||||    
T  48029507 gttttggaaaaccccctaggctagctgactgtgcatttttgctgatgaggcatgttgtgtcaccttttttggatgacgtggcgcgctgactgtata 48029602  T

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Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 3672582 - 3672664
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||| ||||| ||  || |||||||||||||||||||| ||| ||||| ||||| ||||||||||| |||||||| ||||    
T  3672582 ccctaggccagctaacagtgtattttcgctgatgtggcacgctgagtcacctttttctgatgacgtggcgcgctgactatata 3672664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 12760696 - 12760615
Alignment:
Q  252 ccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||  | ||| ||||| |||||||||||| ||| | ||||||    
T  12760696 ccctaggtcagctgactgtgcattttcgctgatgtggcatgttgcgtaacc-ttttctgatgacgtggcatgcttaatgtata 12760615  T

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Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 43860621 - 43860687
Alignment:
Q  254 ctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggc 320  Q
    |||| |||||||||| ||||||||||||||||||||||| ||| ||||| |||||  ||||||||||    
T  43860621 ctagatcagctgactgtgcattttcgctgatgtggcacgctgattcacccttttctaatgacgtggc 43860687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 34027155 - 34027060
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||||||||| |||||||| |||||||||||| ||||  ||| | ||||  ||||| ||||| |||||||||||||    
T  34027155 gttttggaaaaccccctagaccagctgactgtgcatttttgctgatgtggcatgttgtgtcagcctttttggatgatgtggcgcgctgactgtata 34027060  T

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Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 2657247 - 2657299
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacg 292  Q
    |||||||||||| ||||||  ||||||||| |||||||||||||||||||||||    
T  2657247 gttttggaatac-ccctagaccagctgactgtgcattttcgctgatgtggcacg 2657299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 2658051 - 2657955
Alignment:
Q  239 gttttggaatacaccc-taggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||| ||| |||| || |||||| || ||||||||||||||| || | ||| ||||| ||||| ||||||||||| || ||| ||||||    
T  2658051 gttttggaatacccccataggccaactgactgtgtattttcgctgatgtgacatgctgagtcacctttttctgatgacgtggctcgttgaatgtata 2657955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 7515718 - 7515654
Alignment:
Q  270 tgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| |||||||||||| | ||  ||||| ||||  |||||||||||||||||||||||||    
T  7515718 tgcatttttgctgatgtggcatgctgcgtcaccctttttggatgacgtggcacgctgactgtata 7515654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 308
Target Start/End: Complemental strand, 37265271 - 37265203
Alignment:
Q  240 ttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttc 308  Q
    ||||| ||||| |||||||||| |||| | |||||||||| |||||||||||| | | |||||||||||    
T  37265271 ttttgaaataccccctaggtcaactgattgtgcattttcgttgatgtggcacgctcagtcaccgttttc 37265203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 334
Target Start/End: Complemental strand, 47766482 - 47766418
Alignment:
Q  270 tgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||||||||||||| |||| | | ||||||||||| ||||||||||| | |||| ||||||    
T  47766482 tgcattttcgctgatgtgacacgctaagtcaccgttttctgatgacgtggcgcactgattgtata 47766418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 34026011 - 34026106
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| || ||||||  ||| ||||| || ||||| ||||||||| || ||||  ||||| ||||| |||||| |||| |||||||||||||    
T  34026011 gttttggaaaaccccctagaccagttgactgtgtatttttgctgatgtgacatgttgcgtcacctttttcggatgacatggcgcgctgactgtata 34026106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 334
Target Start/End: Original strand, 54053682 - 54053761
Alignment:
Q  255 taggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||| ||||||||| || ||||| |||||||||||| | || |||||| ||||| ||||| ||||| |||||| ||||||    
T  54053682 taggccagctgactgtgtatttttgctgatgtggcatgatgcatcacctttttcggatgaggtggcgcgctgattgtata 54053761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 13127606 - 13127680
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||| |||| ||||| |||||||||||||||   ||  ||||| ||||| ||||| |||||||||||||||||||    
T  13127606 cagcagactgtgcatgttcgctgatgtggcatcatgcgtcacctttttctgatgatgtggcacgctgactgtata 13127680  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 47766115 - 47766049
Alignment:
Q  254 ctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggc 320  Q
    ||||| ||||||||| || |||||| ||||||||||||| ||| |||| |||||| ||||| |||||    
T  47766115 ctaggccagctgactgtgtattttcactgatgtggcacgctgagtcactgttttctgatgatgtggc 47766049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0725
Description:

Target: scaffold0725; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Original strand, 4032 - 4106
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| ||||  ||||| ||||| ||| ||||||| |||||||||||||    
T  4032 cagctgactgtgcatttttgctgatgtggcatgttgcgtcacctttttctgattacgtggcgcgctgactgtata 4106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0725; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 334
Target Start/End: Complemental strand, 4902 - 4822
Alignment:
Q  253 cctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| |||||||||| |||||||| |||||||||||| | |   ||||| ||||||| ||||||||| |||||||||||||    
T  4902 cctagatcagctgactgtgcatttttgctgatgtggcatgctccgtcacctttttcag-tgacgtggcgcgctgactgtata 4822  T

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Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 334
Target Start/End: Complemental strand, 111483 - 111409
Alignment:
Q  260 cagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||||||| |||||||| |||||||||||| | ||  ||||| ||||||||||||||||| |||||| ||||||    
T  111483 cagctgactatgcatttttgctgatgtggcatgatgcgtcacctttttcagatgacgtggcgcgctgattgtata 111409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 334
Target Start/End: Original strand, 227490 - 227563
Alignment:
Q  261 agctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| |||||||| | |||||||||| | |  |||||| ||||| ||||||||||| |||||||||||||    
T  227490 agctgactgtgcatttttgttgatgtggcatgctccatcacctttttcggatgacgtggcgcgctgactgtata 227563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 228526 - 228453
Alignment:
Q  261 agctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    |||||||| |||||||| |||||||||||| | |   ||||| ||||| ||||||||||| |||||||||||||    
T  228526 agctgactgtgcatttttgctgatgtggcatgctccgtcacctttttcggatgacgtggcgcgctgactgtata 228453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 334
Target Start/End: Original strand, 4687 - 4757
Alignment:
Q  264 tgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgtata 334  Q
    ||||| |||||||| |||||||||||| | ||  ||| | ||||| ||||||||||| |||||||||||||    
T  4687 tgactgtgcatttttgctgatgtggcatgatgcgtcatctttttctgatgacgtggcgcgctgactgtata 4757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 42903 - 42811
Alignment:
Q  239 gttttggaatacaccctaggtcagctgactctgcattttcgctgatgtggcacgttgaatcaccgttttcagatgacgtggcacgctgactgt 331  Q
    ||||| |||||| ||||||| |||| |||| |||||||| | ||||||| || | ||  ||| | ||||| | ||||||||||||||||||||    
T  42903 gttttagaataccccctaggccagccgactgtgcatttttgttgatgtgacatgctgggtcagctttttctgctgacgtggcacgctgactgt 42811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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