View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306-Insertion-11 (Length: 392)

Name: NF3306-Insertion-11
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306-Insertion-11
NF3306-Insertion-11
[»] chr7 (1 HSPs)
chr7 (8-392)||(44671191-44671575)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 8 - 392
Target Start/End: Original strand, 44671191 - 44671575
Alignment:
Q  8 ctctgtttctttttgccttcaaccttccccatcaataataataatcaataaaaagaaagaaattagaaaattttgaacatatacatacgtgattagatat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671191 ctctgtttctttttgccttcaaccttccccatcaataataataatcaataaaaagaaagaaattagaaaattttgaacatatacatacgtgattagatat 44671290  T
Q  108 cggaaatattattatagtacacctgcaagacgtaattgaacaattaacaaaagcatgcatgaggttatatttaagtttgagattaatgctcttgtttctg 207  Q
    |||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671291 cggaaacattattatagtacgcctgcaagacgtaactgaacaattaacaaaagcatgcatgaggttatatttaagtttgagattaatgctcttgtttctg 44671390  T
Q  208 nnnnnnnnnnnnnnnnngatattatgattcaaaacacttttttacacgataatgatcacaatcctaatgacctttggcttcgctcttgataacgacgatc 307  Q
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671391 tttttgttttttgttttgatattatgattcaaaacacttttttacacgataatgatcacaatcctaatgacctttggcttcgctcttgataacgacgatc 44671490  T
Q  308 aacattattcaatcgttgcaacctcatttgctgataaaattgagcaataaactcatcggctttatcatcaatcttgtcatcccca 392  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44671491 aacgttattcaatcgttgcaacctcatttgctgataaaattgagcaataaactcatcggctttatcatcaatcttgtcatcccca 44671575  T

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