View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306-Insertion-12 (Length: 364)
Name: NF3306-Insertion-12
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 364
Target Start/End: Complemental strand, 32988555 - 32988199
Alignment:
| Q |
8 |
ctaggagccaaggatattgctgtacgagcttgggatgagtccctcaamamccaacctcagaacctcatttggaatctcatggcaagtgcacatactccaa |
107 |
Q |
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| T |
32988555 |
ctaggagccaaggatattgctgtacgagcttgggatgagtccctcaacacccaacctcagaacctcatttggaatctcatggcaagtacacatactccaa |
32988456 |
T |
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| Q |
108 |
accttgtaacttagtactagctccggtacaatatataagaaaaaattaagtctacaaaagttaacgtatttggtcttaaatttggttcaaatatatcaat |
207 |
Q |
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| T |
32988455 |
accttgtaacttagtactagctccggtacaatatataagaaaaaattaagtctacaaaagttaacgtatttggtcaaaaatttggttcaaatatatcaat |
32988356 |
T |
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| Q |
208 |
ttttattgactgagggcgtaaatcacgttaaaactttgctttaataaagcatctgaattaacaagcttttactatgcatttgttcagggcatgatgaata |
307 |
Q |
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| T |
32988355 |
ttttattaactgagggcgtaaatcacgttaaaactttgctttaataaagcatctgaattaacaagcttttactatgcatttgttcagggcatgatgaata |
32988256 |
T |
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| Q |
308 |
actgctggttcaaagtgaaatcaagtttatgcaaagctaacaagggtgaaattggaa |
364 |
Q |
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| T |
32988255 |
actgctggttcaaagtgaaatcaagtttatgcaaagctaacaagggtgaaattggaa |
32988199 |
T |
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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 24863563 - 24863496
Alignment:
| Q |
15 |
ccaaggatattgctgtacgagcttgggatgagtccctcaamamccaacctcagaacctcatttggaat |
82 |
Q |
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||||||| ||||||||| |||| ||||||||| | ||||| | ||||||| | || |||||||||||| |
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| T |
24863563 |
ccaaggagattgctgtaagagcatgggatgaggcactcaacacccaacctgaaaatctcatttggaat |
24863496 |
T |
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