View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306-Insertion-13 (Length: 307)
Name: NF3306-Insertion-13
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-13 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 24618636 - 24618418
Alignment:
| Q |
8 |
agttttgtccataaggttactcattaaaatctctctaaaactaaacnnnnnnnnnntaactatgcaataatttccttgtgattgccagcacctctaagaa |
107 |
Q |
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| T |
24618636 |
agttttgtccataaggttactcattaaaatctctctaaaactaaacaaataaaaaataactatgcaataatttccttgtgattgccagcacctctaagaa |
24618537 |
T |
|
| Q |
108 |
tttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24618536 |
tttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcatt |
24618437 |
T |
|
| Q |
208 |
aaactcaaccacaggatca |
226 |
Q |
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||||||||||||||||||| |
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| T |
24618436 |
aaactcaaccacaggatca |
24618418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 1344237 - 1344030
Alignment:
| Q |
19 |
taaggttactcattaaaatctctctaaaactaaacnnnnnnnnnntaactatgcaataatttccttgtgattgccagcacctctaagaatttctattttc |
118 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||| |||| |
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| T |
1344237 |
taaggttactcattaaaatctatctaaaactaaacaaataaaaaataattatgcaataatttccctgtgattgccagcatctctaagaatttcttttttt |
1344138 |
T |
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| Q |
119 |
ctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaacca |
218 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||||||||| ||||||||||| |
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| T |
1344137 |
ctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaacca |
1344038 |
T |
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| Q |
219 |
caggatca |
226 |
Q |
| |
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|| ||||| |
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| T |
1344037 |
caagatca |
1344030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 1355350 - 1355557
Alignment:
| Q |
19 |
taaggttactcattaaaatctctctaaaactaaacnnnnnnnnnntaactatgcaataatttccttgtgattgccagcacctctaagaatttctattttc |
118 |
Q |
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||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||| |||| |
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| T |
1355350 |
taaggttactcattaaaatctatctaaaactaaacaaataaaaaataattatgcaataatttccctgtgattgccagcatctctaagaatttcttttttt |
1355449 |
T |
|
| Q |
119 |
ctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcattaaactcaacca |
218 |
Q |
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| T |
1355450 |
ctctcttcccaagaacaatttaatctgcgtgcaaattcttcgacttccctgtcaattctttcctgtaaggcctgatcaatctcatcatcaaactcaacca |
1355549 |
T |
|
| Q |
219 |
caggatca |
226 |
Q |
| |
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|| ||||| |
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| T |
1355550 |
caagatca |
1355557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 223
Target Start/End: Complemental strand, 1361261 - 1361143
Alignment:
| Q |
99 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaat |
198 |
Q |
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|||||||||||||| || | |||||||| | || ||| ||||||||||| ||||||||||||||||| ||||| | || ||| | |||||||| |
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| T |
1361261 |
ctctaagaatttcttttattctctcttcgcgagtacaatttaatctgcgcgcaaattcttccacttctttgtcagtcatt------aagtcatgatcaat |
1361168 |
T |
|
| Q |
199 |
ctcatcattaaactcaaccacagga |
223 |
Q |
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|||||||| |||||||||||||||| |
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| T |
1361167 |
ctcatcatcaaactcaaccacagga |
1361143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 1350687 - 1350615
Alignment:
| Q |
99 |
ctctaagaatttctattttcctctcttcccaagcacagtttaatctgcgtgcaaattcttccacttccctgtc |
171 |
Q |
| |
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|||||||| ||||| || | ||||||||| ||| || ||||||||||| ||||||||||||||||| ||||| |
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| T |
1350687 |
ctctaagagtttcttttattctctcttccaaagtgcaatttaatctgcgcgcaaattcttccacttctctgtc |
1350615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 1350790 - 1350750
Alignment:
| Q |
8 |
agttttgtccataaggttactcattaaaatctctctaaaac |
48 |
Q |
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|||||||| ||||||||||||||||| ||| |||||||||| |
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| T |
1350790 |
agttttgttcataaggttactcattacaatttctctaaaac |
1350750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 141
Target Start/End: Complemental strand, 1365119 - 1365043
Alignment:
| Q |
65 |
aactatgcaataatttccttgtgattgccagcacctctaagaatttctattttcctctcttcccaagcacagtttaa |
141 |
Q |
| |
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|||||||||| ||||||||||||||||||| || | ||| ||||||| || | ||||||||| ||| ||| ||||| |
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| T |
1365119 |
aactatgcaacaatttccttgtgattgccaacatatgtaataatttcttttattctctcttccaaagaacaatttaa |
1365043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 43364468 - 43364537
Alignment:
| Q |
137 |
tttaatctgcgtgcaaattcttccacttccctgtcaattttttcctgcaagacctgatcaatctcatcat |
206 |
Q |
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||||||||||| |||||||||||||||||||| |||||| || | || ||| || ||||||||||||||| |
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| T |
43364468 |
tttaatctgcgggcaaattcttccacttccctatcaattcttgcttgtaaggccggatcaatctcatcat |
43364537 |
T |
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