View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306-Insertion-14 (Length: 229)
Name: NF3306-Insertion-14
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-14 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 30432944 - 30433169
Alignment:
| Q |
7 |
agtttgtacctatagttaattgaaaccaccaactattaattcacaccatattggaatcaaaatgtgtggactcatatagtaggtgtaggactacttagac |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30432944 |
agtttgtccctatagttaattgaaaccaccaactattaattcacaccatattggaattaaaatgtgtggattcatatagtaggtgtaggactacttagac |
30433043 |
T |
|
| Q |
107 |
tcccatgaagatactttatattttgcccctatagttattttgattctttgaggaactaaaagacttatatttaattgttattgcaaaagacaaatatagt |
206 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30433044 |
tcccatgaacatactttatattttgcccctatagttattttgattctttgaggaactaaaagacttatatttaactgttattgcaaaagacaaatatagc |
30433143 |
T |
|
| Q |
207 |
aaa---tagtatagtttgtccttata |
229 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
30433144 |
aaatagtagtatagtttgtccttata |
30433169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University