View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306-Insertion-2 (Length: 701)
Name: NF3306-Insertion-2
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-2 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 617; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 8 - 701
Target Start/End: Complemental strand, 2755576 - 2754871
Alignment:
| Q |
8 |
tttagtgtgcatatcttgccattattatatatgattgaatcatattattaattctgtttatctgttttagactcattgtaggggaaatccgaagtttaat |
107 |
Q |
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| T |
2755576 |
tttagtgtgcatatcttgccattattatatatgattgaatcatattattaattctgtttat-tgttttagactcattgtaggggaaatccgaagtttaat |
2755478 |
T |
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| Q |
108 |
tttcacaagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctatatttactacaatcttc |
207 |
Q |
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| T |
2755477 |
tttcacaagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctatatttactacaatcttc |
2755378 |
T |
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| Q |
208 |
atcagtaatttattggccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgtcactaattcaccattttattttaatggttgcag |
307 |
Q |
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| T |
2755377 |
atcagtaatttattggccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgtcattaattcaccattttattttaatggttgcag |
2755278 |
T |
|
| Q |
308 |
ttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatgcttccagacttggtacttttgttc--tgtctcaacttaattacct |
405 |
Q |
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| T |
2755277 |
ttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatgcttccagacttggtacttttgttctttgtctcaactcaattacct |
2755178 |
T |
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| Q |
406 |
atattttctaccttaagacatatgattattattgtagataacattgttttacaaaccaaagcg---------acctgttgaattggcttaatcccggtta |
496 |
Q |
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| T |
2755177 |
atattttctaccttaagacatatgattattattgtagataacattgttttacaaaccaaagcgaccggttcaaccggttgaattggcttaatcctggtta |
2755078 |
T |
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| Q |
497 |
tagtagagtctcgttgaactggtctgagtcgtagtttgtttgatctccgttctgattgattttttaaacattgagagata--atatcttgtaattaagca |
594 |
Q |
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| T |
2755077 |
tagtagagtctcgttgaactggtccgagtcgtagtttgtttgatctccgttctgattgattttttaaacattgagagataatatatcttgtaattaagca |
2754978 |
T |
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| Q |
595 |
ctagtgtgattagttatttacaaacctatatgaacaatagaagtcacaattatgtaattttccaatcaaaattaagatttctgttcatggtttcaggttg |
694 |
Q |
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| T |
2754977 |
ctagtgtgatgagttatttacaaacctatatgaacaatagaagtcacaattatgcaattttccaatcaaaattaagatttctgttcatggtttcaggttg |
2754878 |
T |
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| Q |
695 |
gcacaca |
701 |
Q |
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| T |
2754877 |
gcacaca |
2754871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 33 - 362
Target Start/End: Complemental strand, 2747503 - 2747164
Alignment:
| Q |
33 |
tatatatgattgaatcatattattaattctgtttatctgttttagactcattgtaggggaaatccgaagtttaattttcacaagtacatgaaccgtgcgc |
132 |
Q |
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| T |
2747503 |
tatatatgattgaaccatattattaattttgtttttctattttagactcattgtaggggaaatccaaagtttaattttcacaagtacatgatccgtgcac |
2747404 |
T |
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| Q |
133 |
ttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctatatttactacaatcttcat----------cagtaatttattg |
222 |
Q |
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| T |
2747403 |
ttgaagatgacttccaaaacgttgttggtattaggtatgtggatatgcaaagtttctataactatcaaaatcttcatcaatcataagcaataataagtag |
2747304 |
T |
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| Q |
223 |
gccaaattttctttgttcagcctatagtgtaaagttatgtattctttgttgtcactaattcaccattttattttaatggttgcagttggtatctttggat |
322 |
Q |
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| T |
2747303 |
gccaaattttctttgtgcaacttatattgtaatgttgttgattctctcttgtcactaactcaccattttattttaatggttgcagttggtatctttggat |
2747204 |
T |
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| Q |
323 |
ctttgtggtcatatttttgttgcttaatgtcaatggtatg |
362 |
Q |
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| T |
2747203 |
ctttgtggtcatatttatgttgcttaatatcaatggtatg |
2747164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 626 - 701
Target Start/End: Complemental strand, 2747150 - 2747072
Alignment:
| Q |
626 |
gaacaatagaagtcacaattatgtaattttccaa---tcaaaattaagatttctgttcatggtttcaggttggcacaca |
701 |
Q |
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| T |
2747150 |
gaacaatagaagtcacaattatgtcattgtccaacaatcaaaattaagatttatgtttattgtttcaggttggcacaca |
2747072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 2372842 - 2372760
Alignment:
| Q |
8 |
tttagtgtgcatatcttgccattattatatatgattgaatcatattattaattctgtttatctgttttagactcattgtaggg |
90 |
Q |
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| T |
2372842 |
tttagtgtgcatatcttgccaatattatctattattgaatcatattattaatgatgattctctatattagactcattgtaggg |
2372760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 34227365 - 34227446
Alignment:
| Q |
114 |
aagtacatgaaccgtgcgcttgaagatgatt----tcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctat |
191 |
Q |
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| T |
34227365 |
aagtacatgaactgtgcacttgaagatgaatgatatcaagaaagttgttggtataaggtatctgcttctgtcaagcttctat |
34227446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 365
Target Start/End: Original strand, 55322485 - 55322559
Alignment:
| Q |
291 |
tattttaatggttgcagttggtatctttggatctttgtggtcatatttttgttgcttaatgtcaatggtatgctt |
365 |
Q |
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| T |
55322485 |
tattttcatggttgcagttggtatctttggctctttgtggtcatcttcttgttgttaaatatcaatggtatgctt |
55322559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 55322262 - 55322323
Alignment:
| Q |
99 |
aagtttaattttcacaagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcgg |
160 |
Q |
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| T |
55322262 |
aagtttaattttcacaagtacatgattcgtgcccttgaagatgatttcaagcaagttgtcgg |
55322323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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