View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306-Insertion-4 (Length: 625)
Name: NF3306-Insertion-4
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 514
Target Start/End: Original strand, 26156046 - 26156552
Alignment:
| Q |
8 |
ggaagaacagctaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaag |
107 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26156046 |
ggaagaacaattaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaag |
26156145 |
T |
|
| Q |
108 |
ccgagtaaatcgccacagcctaaagcagggagttctctgtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttg |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26156146 |
ccgagtaaatcgccacagcctaaagcagggagttctctgtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttg |
26156245 |
T |
|
| Q |
208 |
atgggaatttaaagtatttgagtgagcaaccaccggttgcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgt |
307 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26156246 |
atgggaatttaaagcatttgagtgagcaaccaccggttgcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgt |
26156345 |
T |
|
| Q |
308 |
tttgtgtgtgaaacctgtaacgtgacgcattcatggatatgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttt |
407 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26156346 |
tttgtgtgtgaaacctgtaacgagacgcattcatggatatgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttt |
26156445 |
T |
|
| Q |
408 |
tccacggattttattgatgaggattttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaattatgctctatgtttgtttcc |
507 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26156446 |
tccaccgattttattgatgaggattttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaattatgctctatgtttgtttcc |
26156545 |
T |
|
| Q |
508 |
attccac |
514 |
Q |
| |
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||||||| |
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| T |
26156546 |
attccac |
26156552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 8 - 514
Target Start/End: Original strand, 26169344 - 26169850
Alignment:
| Q |
8 |
ggaagaacagctaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaag |
107 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169344 |
ggaagaacaattaggtgagtttttgattcatcaagatgatcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaag |
26169443 |
T |
|
| Q |
108 |
ccgagtaaatcgccacagcctaaagcagggagttctctgtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttg |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169444 |
ccgagtaaatcgccacagcctaaagcagggagttctctgtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttg |
26169543 |
T |
|
| Q |
208 |
atgggaatttaaagtatttgagtgagcaaccaccggttgcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgt |
307 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169544 |
atgggaatttaaagcatttgagtgagcaaccaccggttgcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgt |
26169643 |
T |
|
| Q |
308 |
tttgtgtgtgaaacctgtaacgtgacgcattcatggatatgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttt |
407 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169644 |
tttgtgtgtgaaacctgtaacgagacgcattcatggatatgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttt |
26169743 |
T |
|
| Q |
408 |
tccacggattttattgatgaggattttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaattatgctctatgtttgtttcc |
507 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169744 |
tccaccgattttattgatgaggattttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaattatgctctatgtttgtttcc |
26169843 |
T |
|
| Q |
508 |
attccac |
514 |
Q |
| |
|
||||||| |
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|
| T |
26169844 |
attccac |
26169850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 581 - 622
Target Start/End: Original strand, 26156619 - 26156660
Alignment:
| Q |
581 |
aaatgtgtattatggacttgattgtaaattccaaactatacc |
622 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26156619 |
aaatgtgtattatggacttgattgtaaattccaaactatacc |
26156660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 581 - 622
Target Start/End: Original strand, 26169917 - 26169958
Alignment:
| Q |
581 |
aaatgtgtattatggacttgattgtaaattccaaactatacc |
622 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
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| T |
26169917 |
aaatgtgtattatggacttgattgtaaattccaaactatacc |
26169958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 34 - 487
Target Start/End: Complemental strand, 28094685 - 28094232
Alignment:
| Q |
34 |
ttcatcaagatgatcatgtttttggaaaaaccatttcggagttgttacctaagagggttatatgcgtttggaagccgagtaaatcgccacagcctaaagc |
133 |
Q |
| |
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|||| ||||||||| ||||||||| || || ||| | ||| || |||| || || ||||||||||||||||||||||| || ||| |||| || || || |
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| T |
28094685 |
ttcaccaagatgataatgtttttgataagactattgcagaggtgctaccaaaaagagttatatgcgtttggaagccgagaaattcgacacaaccgaaggc |
28094586 |
T |
|
| Q |
134 |
agggagttctctgtggagtgcagggtttttgaaggataactggattaatacagatcttccatcaaccaagtttgatgggaatttaaagtatttgagtgag |
233 |
Q |
| |
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| |||| ||| ||||||||||||| | | | ||| || |||||||| |||||| | |||| ||| |||||||| | ||| | ||||||||||| | |
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| T |
28094585 |
aaagagtagtctttggagtgcagggtatctaagggacaattggattaacacagatttgccattaacaaagtttgagagtaatatgaagtatttgagccaa |
28094486 |
T |
|
| Q |
234 |
caaccaccggttgcgtccaggaaatatttttatagggtggagaatacggttactccagtggcggataaccctgttttgtgtgtgaaacctgtaacgtgac |
333 |
Q |
| |
|
|| || |||| ||| || ||||| |||||||| || |||||||| ||||| || || | |||||||||||||| || ||||||||||| || || |
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| T |
28094485 |
caggaacatgttgtgtctagaaaatacttttatagagttgagaatactgttacgcctgttcctgataaccctgttttatgcgtgaaacctgtgacagaac |
28094386 |
T |
|
| Q |
334 |
gcattcatggatatgctaggctctttattgctcagtgctttgctaagggatatgcggataggattcaggtcttttccacggattttattgatgaggattt |
433 |
Q |
| |
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|||||||| ||||||| || |||| ||| |||||||||| |||| || | || |||| | | ||| | ||||| ||||||||||| || ||||| |
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| T |
28094385 |
gcattcatagatatgcaagattcttcattagtcagtgcttttctaaagggtgtggtgataagttgcagatattttctacggattttatagacttagattt |
28094286 |
T |
|
| Q |
434 |
tgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaat |
487 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| || ||||| ||||| |
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|
| T |
28094285 |
tgttgatgcatgtgttggactcacccatgcaagggttgagggtaaagcatgaat |
28094232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 5e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 430 - 513
Target Start/End: Complemental strand, 55164595 - 55164512
Alignment:
| Q |
430 |
attttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagcctgaattatgctctatgtttgtttccattcca |
513 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||||||| |
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|
| T |
55164595 |
attttgttgatgcatgtgttggactcactcatgcaagggttgaaggaaaagccttaattatactttatgtttgtatccattcca |
55164512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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