View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306-Insertion-5 (Length: 762)
Name: NF3306-Insertion-5
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-5 |
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Alignment Details
Target: chr5 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Original strand, 31879263 - 31879934
Alignment:
| Q |
20 |
ttcataatcaaaatcacacatgcatgtattccattaaaaacaaaactaacgactcaaaacattcatgatagattcgctatattttgtctcgctaaaaata |
119 |
Q |
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| T |
31879263 |
ttcataatcaaagtcacacatgcatgtattccattaaaaacaaaactaacgactcaaaacattcatgattgattcgctatattttatctcgctaaaaata |
31879362 |
T |
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| Q |
120 |
gcatggctctttctcatgacaattaatcctttaagggtttccgactcgtggtaacattgagttgtgttggtgtccaaatgtccgagtactatgtatttat |
219 |
Q |
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| T |
31879363 |
gcatgactctttctcatgacaattaatccttcaaaggtttcctactcgtggtaacattgagttgtgttggtgtccgaatgtccgagtactatgtatttat |
31879462 |
T |
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| Q |
220 |
ttttgacttagggttaaatacttcttgtacttgtcacannnnnnnncttaataaagcnnnnnnnatgttnnnnnnncaacattttcaatttatgaataag |
319 |
Q |
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| T |
31879463 |
ttttgacttagggttgaatatttcttgtacttgtcactttttttttcttaataaagctttttttatgttaaaaaaacaacattttctatttatgaataag |
31879562 |
T |
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| Q |
320 |
atatatacttattttgagaccacagtgatgatgagtaacttannnnnnngattactgatgactaacttttatatttttgaaaacatgcattttatttaat |
419 |
Q |
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| T |
31879563 |
atatatacttattttgagaccacattgatgatgagtaacttatttttttgattactgatgactaacttttatatttttaaaaacatacattttatttaat |
31879662 |
T |
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| Q |
420 |
cattcaatcacaagtgcaaacccaacacaagcaaatcaaaataacatgcatggccatatagtgagaatgtgaaaccaacactaaaattaatgaatgggca |
519 |
Q |
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| T |
31879663 |
cattca-tcacaagtgcaaacccaacacaagcaaatcaaaataacatgcatggccatacagtgagaatgtgaaaccaacactaaaattaatgaatgggca |
31879761 |
T |
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| Q |
520 |
cgtggtgctaccactagaaacacatgcatttgtcaggtcgtctttgcttattttaaatattgtcaatttacgtggatctatatctcataacataggaaaa |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31879762 |
cgtggtgctaccactagaaacacatgcatttgtcaggtcgtctttgcttattttaaatattgtcaatttacgtggatctatatctcatgacataggaaaa |
31879861 |
T |
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| Q |
620 |
atgacgagtattataattttcacgagccaaatgagctagatcacatttttgtaatattacaaataaataaatg |
692 |
Q |
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| T |
31879862 |
atgacgagtattttaattttcacgagccaaatgagctaggtcacatttttgtaatattacaaataaataaatg |
31879934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 719 - 752
Target Start/End: Original strand, 31880287 - 31880320
Alignment:
| Q |
719 |
atagtgtgaatgttcaaggaaacttcttactcaa |
752 |
Q |
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| T |
31880287 |
atagtgtgaatgttcaaggaaacttcttactcaa |
31880320 |
T |
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Back To:
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