View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3306-Insertion-6 (Length: 568)

Name: NF3306-Insertion-6
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3306-Insertion-6
NF3306-Insertion-6
[»] chr4 (4 HSPs)
chr4 (8-329)||(37927435-37927759)
chr4 (414-551)||(37927830-37927967)
chr4 (471-518)||(30226289-30226336)
chr4 (471-518)||(24783152-24783199)
[»] chr7 (1 HSPs)
chr7 (471-518)||(41532812-41532859)
[»] chr3 (1 HSPs)
chr3 (471-518)||(52725005-52725052)
[»] chr2 (2 HSPs)
chr2 (471-518)||(21612995-21613042)
chr2 (471-518)||(41055506-41055553)
[»] chr5 (3 HSPs)
chr5 (471-518)||(8403864-8403911)
chr5 (471-518)||(12106056-12106103)
chr5 (471-518)||(21361305-21361352)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 37927435 - 37927759
Alignment:
Q  8 caaacttgtgcagaggtttgttttagcatatgctagggttaaaacctttcctccaagggaaaagtttcaaaaaaccaaggtttaaattccatgaattgat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37927435 caaacttgtgcagaggtttgttttagcatatgctagggttaaaacctttcctccaagtgaaaagtttcaaaaaaccaaggtttaaattccatgaattgat 37927534  T
Q  108 agatctaatctaaccttcctaacatcttttaatgatg-nnnnnnnttcaaaataacccttacaaagtgaagtcatgccccactttagtccaaataatcca 206  Q
    |||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  37927535 agatctaatctaaccttcctaacatcttttaatgatgaaatttttttcaaaataacccttacaaagtgaagtgatgccccactttagtccagataatcca 37927634  T
Q  207 tggagatcatgcttgcatatctcttttgaa---agttttaaagttgtttctagtttgttattagtcccacattcagggatgaataatatttgttcatcaa 303  Q
    |||||||||||| ||||||||||| |||||   |||||| ||||||||| |||||||||||||||| ||  ||||||| |||  ||| ||||||||||||    
T  37927635 tggagatcatgcctgcatatctctgttgaagttagttttgaagttgtttgtagtttgttattagtctcatgttcaggg-tgatcaatgtttgttcatcaa 37927733  T
Q  304 aggggtagctatggctacctcaaaag 329  Q
    ||||||||||||||||||||||||||    
T  37927734 aggggtagctatggctacctcaaaag 37927759  T

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Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 414 - 551
Target Start/End: Original strand, 37927830 - 37927967
Alignment:
Q  414 taggtgaaataaatttttgtctgactttggttactttctagccgaatttcaatttacttgagtctttgaagggtcgctaagttcgactttcataaatagc 513  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37927830 taggtgaaataaatttttgtctgactttggttacttttcagccgaatttcgatttacttgagtctttgaagggtcgctaagttcgactttcataaataac 37927929  T
Q  514 tactagttatcaagttactttttaggtacagttctcta 551  Q
     ||||| |||||||||||||||||||||||||||||||    
T  37927930 cactagctatcaagttactttttaggtacagttctcta 37927967  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 30226336 - 30226289
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  30226336 ttgagtctttgaaggatcgccaagttcgactttcgtaaatagctacta 30226289  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 24783199 - 24783152
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||| ||||||  ||||||| ||||||||||||||||||    
T  24783199 ttgagtctttgaatggtcgccgagttcgattttcataaatagctacta 24783152  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 41532812 - 41532859
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  41532812 ttgagtctttgaaggatcgccaagttcgactttcgtaaatagctacta 41532859  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 52725005 - 52725052
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  52725005 ttgagtctttgaaggatcgccaagttcgactttcgtaaatagctacta 52725052  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 21613042 - 21612995
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||||    
T  21613042 ttgagtctttgaaggatcgccaagttcgactttcgtaaatagctacta 21612995  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Complemental strand, 41055553 - 41055506
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    |||||||||| || ||||| | ||||||||||||||||||||||||||    
T  41055553 ttgagtctttaaaaggtcgttgagttcgactttcataaatagctacta 41055506  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 8403864 - 8403911
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||||||||||  ||||| | ||||||||||||||||||    
T  8403864 ttgagtctttgaagggtcgccgagttcaattttcataaatagctacta 8403911  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 12106056 - 12106103
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||||| ||||  |||||||||||| |||||||||||||    
T  12106056 ttgagtctttgaaggatcgccgagttcgactttcgtaaatagctacta 12106103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 518
Target Start/End: Original strand, 21361305 - 21361352
Alignment:
Q  471 ttgagtctttgaagggtcgctaagttcgactttcataaatagctacta 518  Q
    ||||||||||||||| |||| ||||||||||||  |||||||||||||    
T  21361305 ttgagtctttgaaggatcgccaagttcgacttttgtaaatagctacta 21361352  T

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