View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306-Insertion-7 (Length: 550)
Name: NF3306-Insertion-7
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 550
Target Start/End: Original strand, 2114109 - 2114651
Alignment:
| Q |
8 |
ggaggaaggtgaatggtatcatagttctttaccttggaaagccttgtrgkaataataacatgagtccctcctgtgttgtttttcggtatcaaatcataca |
107 |
Q |
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| T |
2114109 |
ggaggaaggtgaatggtatcatagttttttaccttggatagccttgtagtaataataacatgagtccctcctgtgttgtttttcggtatcaaatcataca |
2114208 |
T |
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| Q |
108 |
gatcttttccttcccaccattcctcttcactctcaagattatcaattatcaacaagtaaggtgtatcaccaaaaagctccctcttgattctcttgaatgc |
207 |
Q |
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| T |
2114209 |
gatcttttccttcccaccattcctcttcactctcaagattatcaattatcaacaagtaaggtgtatcaccaaaaagctccctcttgattctcttgaatgc |
2114308 |
T |
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| Q |
208 |
ttcgagttcctgctcttcaaagctgcgaattcgacccctttcaatctcggaatcagcaccaacatccaaaccgaaatttcgtgacaagttcarkatgttc |
307 |
Q |
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| T |
2114309 |
ttcgagttcctgctcttcaaagctgcgaattcgacccctttcaatctcggaatcagcaccaacatccaaaccgaaatttcgtgacaagttcaatatgttc |
2114408 |
T |
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| Q |
308 |
tgtctaaaattcctagcttcaccaccaatccacaaaaccatcttgtacctttggtaatatctatgagcaaattctaatgccaattcagattttccaattc |
407 |
Q |
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| T |
2114409 |
tgtctaaaattcctagcttcaccaccaatccacaaaaccatcttgtacctttggtaatatctatgagcaaattctaatgccaattcagattttccaattc |
2114508 |
T |
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| Q |
408 |
cagaaactccgctaatgcaaatcacactactactacacaaactcttgtagttgtagcttccactttttgacctcttattcttcaatctcttcaatgaact |
507 |
Q |
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| T |
2114509 |
cagaaactccgctaatgcaaatcacactactactacacaaactcttgtagttgtagcttccactttttgacttcttattcttcaatctcttcaatgaact |
2114608 |
T |
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| Q |
508 |
gttacctatcatcggttgttcaatccaagcctctaaatttggt |
550 |
Q |
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| T |
2114609 |
gttacctatcatcggttgttcaatccaagcctctaaatttggt |
2114651 |
T |
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