View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306-Insertion-9 (Length: 459)
Name: NF3306-Insertion-9
Description: NF3306
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306-Insertion-9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 48 - 459
Target Start/End: Original strand, 12321101 - 12321510
Alignment:
| Q |
48 |
attctgtgtattttctggaaggcagatacaaatttctatatgagatcgattctccacattctccacaagactgtttagtttggatgatagttatcccatc |
147 |
Q |
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| T |
12321101 |
attctgtgtattttctggaaggcagatacaaatttctatatgagatcgattctccacattctccacaagactgtttagtttggatgatagttatcccatc |
12321200 |
T |
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| Q |
148 |
ttcatattgctaagaccagatgattttctccggcatcttcacattgcttaatctcttgaagatatccatcggcactatgatcattcattcaaattccact |
247 |
Q |
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| T |
12321201 |
ttcatattgctaagaccagttgattttctctggcatcttcgcattgcttaatct--tgaagatatccatcggcactatgatcattcattcaaattccact |
12321298 |
T |
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| Q |
248 |
cacaacttttcaacttcaatggggggataatgacattatttctgacatgatcagcttatcacaaaatgcagataatcaaaactggcaatcttatcataag |
347 |
Q |
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| T |
12321299 |
cacaacttttcaacttcaatggggggataatgacattatttctgacatgatcagcttatcacaaaatgcagataatcataactggcaatcttatcataag |
12321398 |
T |
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| Q |
348 |
tccatatttaatgggcagattattgaggttaatcgtattctccatctagctcttcaacgcagattatggtttcccaacatcttattatacggagtcattc |
447 |
Q |
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| T |
12321399 |
tccatatttaatgggcagattattgaggttaatcgtattctccatctagctcttcaacgcagattatggtttcccaacatcttattatacggagtcattc |
12321498 |
T |
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| Q |
448 |
tttccgacatca |
459 |
Q |
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| T |
12321499 |
tttccgacatca |
12321510 |
T |
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