View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306R-Insertion-2 (Length: 945)
Name: NF3306R-Insertion-2
Description: NF3306R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306R-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 466; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 9 - 522
Target Start/End: Complemental strand, 2669819 - 2669306
Alignment:
| Q |
9 |
catataggattatctgttaggttgaaaagaaccaattttccaccatcttgaatcttgagagttccattagaattttcaagaggggtgtctctatttgcca |
108 |
Q |
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| T |
2669819 |
catataggattatctgtttggttgaaaagaaccaattttccaccatcttgaatcttgagagttccattagaattttcaagaggggtgtctctatttgcca |
2669720 |
T |
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| Q |
109 |
cccaaacaaatattttatctggaacatctttgtaccatatacctaagtaccattttgaagtggttgtgttgaagaaaccaaactcaaatactctttgtgg |
208 |
Q |
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| T |
2669719 |
cccaaacaaatattttatctggaacatctttgtaccatatacctaagtaccattttgaagtggttgtgttgaagaaaccaaactcaaatactttttgtgg |
2669620 |
T |
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| Q |
209 |
agatacaagggtttggttggaaccaagagattgtgatgcagttaaggtatcagaagagattacaccattgaaaaaatatagagataagatgaagtagatt |
308 |
Q |
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| T |
2669619 |
agatataagggtttggttggaaccaagagattgtgatgcagttaaggtatcagaagagattacaccattgaaaaaatatagagataagatgaagtagatt |
2669520 |
T |
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| Q |
309 |
cggagttttgcagaagtggaacttttcattttgcaatgtttgttcctaaaatcgaaactttttacatatgttacatatttaagatgaaattactttgcgt |
408 |
Q |
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| T |
2669519 |
tggagttttgaagaagtggaacttttcattttgcaatgtttgttcctaaaatcaaaactttttacatatgttacaaatttaagataaaattattttgcgt |
2669420 |
T |
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| Q |
409 |
tctgtttagggcgtcaataatgtaatgttaagagatgatgtaagttattgactgttttaaattattatttgtacagataagcttacccacattttcgagt |
508 |
Q |
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| T |
2669419 |
tctgtttagggcgtcaataatgtaatgttaaaagatgatgtaagttattgacttttttaaattattatttgtacagataagcttacccacattttcgagt |
2669320 |
T |
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| Q |
509 |
tgaccgcatacgta |
522 |
Q |
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| T |
2669319 |
tgaccgcgtacgta |
2669306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 634 - 713
Target Start/End: Complemental strand, 2669257 - 2669178
Alignment:
| Q |
634 |
accaatgccttaggactctatttaacattgttctttcaattataatcaactttctactttttagatttattggataaatg |
713 |
Q |
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| T |
2669257 |
accaatgccttaggactctatttaacattgttctttcaattataatcaactttttactttttaaattcattggataaatg |
2669178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 776 - 851
Target Start/End: Complemental strand, 2669095 - 2669024
Alignment:
| Q |
776 |
tatagcatacacaatgcagaaaaactttcatccccctaaaaataaaattatgaaattaatttgtttggttgatgga |
851 |
Q |
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| T |
2669095 |
tatagcatacacaatgcagaaaa--cttcatccccctaaaaataaaa-tatgaaatt-gtttgtttggttgatgga |
2669024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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