View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3306_1D_high_13 (Length: 275)
Name: NF3306_1D_high_13
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_high_13 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 23 - 275
Target Start/End: Original strand, 2755570 - 2755823
Alignment:
| Q |
23 |
cactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctgatgnnnnn |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2755570 |
cactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctgatgaaaaa |
2755669 |
T |
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| Q |
123 |
nnnnnnnnn-gttagaaggaataacaatgatgtcaatgaaaacattgtactaaaaccagtaaaatacaagtatctacatataattaacctaccaaccacc |
221 |
Q |
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| T |
2755670 |
aaacgaaaaagttagaaggaataacaatgatgtcaatgaaaacattgtactaaaaccagtaaaatacaagtatctacatataattaacctaccaaccacc |
2755769 |
T |
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| Q |
222 |
ccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgt |
275 |
Q |
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| T |
2755770 |
ccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaagcgt |
2755823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 2747528 - 2747613
Alignment:
| Q |
30 |
atcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
115 |
Q |
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| T |
2747528 |
atcttaccataatgaaaccacgccttaatgtcacataatccaactttgtcactgatccataaaattgcttgaaaaatgatttctga |
2747613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 195 - 272
Target Start/End: Original strand, 2747699 - 2747776
Alignment:
| Q |
195 |
ctacatataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaag |
272 |
Q |
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| T |
2747699 |
ctacatataatcaacctaccacccatcccattatagcataatttttgccaaaaccagtaaaacgattctttataaaag |
2747776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 172 - 273
Target Start/End: Original strand, 2372970 - 2373071
Alignment:
| Q |
172 |
taaaaccagtaaaatacaagtatctacatataattaacctaccaaccaccccattatggcagaatctttgccaaaaccagtaaaatgatccttgataaaa |
271 |
Q |
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|||||||||||||||| || || |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2372970 |
taaaaccagtaaaatataattaactacatataattaacctaccaagcaccccattatagcagaatcattgccaaaaccagtaaaatgatccttgataaaa |
2373069 |
T |
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| Q |
272 |
gc |
273 |
Q |
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|| |
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| T |
2373070 |
gc |
2373071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 2372836 - 2372928
Alignment:
| Q |
23 |
cactaaaatcttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| | |||||||| |
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| T |
2372836 |
cactaaaatcttaccttaatgaaaccaagccttaatgccatatagtccaactttgtcatagatccataaaattgcttgaaaatttatttctga |
2372928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 55322128 - 55322045
Alignment:
| Q |
32 |
cttaccttaatgaaaccaagccttaatgtcacatagtccaactttgtcacagatccataaaattgcttgaaaaatgatttctga |
115 |
Q |
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| T |
55322128 |
cttaccgtaatgaaaccaagtcttaatgtgacataatctgattttgtcacagagccataaaattgcttgaaaaaggattgctga |
55322045 |
T |
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