View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_1D_high_14 (Length: 274)
Name: NF3306_1D_high_14
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 38749315 - 38749067
Alignment:
| Q |
21 |
aagatcaacattcccttcataatttgaggcattaaaactctgcaactgcgtgccaattggaattcttccagaccgattactatccaacagattcaacaag |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38749315 |
aagatcaacattcccttcataatttgaggcattgaaactctgcaactgcgtgccaattggaattcttccagaccgattattatccaacagattcaacaag |
38749216 |
T |
|
| Q |
121 |
gacagacaatcaattttagctagagaaggaggaatcaaaccagagaaatggtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttg |
220 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38749215 |
gacagacaatcaattttagctagagaaggaggaatcaaaccagagaaatggtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttg |
38749116 |
T |
|
| Q |
221 |
aagtaatttctccattcaaattgttgtttgataaattcaacaacaccaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
38749115 |
aagtaatttctccattcaaattgttgtttgataaattcaacgacaccaa |
38749067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 37132645 - 37132397
Alignment:
| Q |
21 |
aagatcaacattcccttcataatttgaggcattaaaactctgcaactgcgtgccaattggaattcttccagaccgattactatccaacagattcaacaag |
120 |
Q |
| |
|
|||||||||||| |||| |||| |||| |||| |||||||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||| | |
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| T |
37132645 |
aagatcaacattgccttgataacttgaagcatcgaaactctgtaactgcgtgccaattggaattcttccagagagattgttatccgctagattcaacatg |
37132546 |
T |
|
| Q |
121 |
gacagacaatcaattttagctagagaaggaggaatcaaaccagagaaatggtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttg |
220 |
Q |
| |
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|||| | |||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||||| | |||||||||||||||||||||||||| | |
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|
| T |
37132545 |
gacacgcgatcaatttgagctagagaaggaggaattggaccagataaatggtttcttgacaagtcaagagaatcaagtgatgttaaccttccaatcttcg |
37132446 |
T |
|
| Q |
221 |
aagtaatttctccattcaaattgttgtttgataaattcaacaacaccaa |
269 |
Q |
| |
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||| ||||||||| |||| |||||| ||||||||||||| ||||||| |
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|
| T |
37132445 |
aagaaatttctcctgtcaacttgttgcttgataaattcaatgacaccaa |
37132397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 37165099 - 37164851
Alignment:
| Q |
21 |
aagatcaacattcccttcataatttgaggcattaaaactctgcaactgcgtgccaattggaattcttccagaccgattactatccaacagattcaacaag |
120 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||| ||||| || ||||||||||||||||| ||| | || ||| ||||||| |||| | |
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|
| T |
37165099 |
aagatcagcattcccttcataacttgaggcatcgaaactctgtaactgggttccaattggaattcttccggacaggttgttattggacagatttaacatg |
37165000 |
T |
|
| Q |
121 |
gacagacaatcaattttagctagagaaggaggaatcaaaccagagaaatggtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttg |
220 |
Q |
| |
|
|| || | |||||||| || ||||||| ||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
37164999 |
gaaaggcgatcaatttgagttagagaatgaggaattaaaccagtgaaatggtttcttgacaagtcaagaaattcaagtgatgttaactttccaatcattg |
37164900 |
T |
|
| Q |
221 |
aagtaatttctccattcaaattgttgtttgataaattcaacaacaccaa |
269 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
37164899 |
aagtaatttcccctgtcaaattgttgcttgataaattcaatgacaccaa |
37164851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 269
Target Start/End: Original strand, 35142805 - 35143019
Alignment:
| Q |
55 |
aaactctgcaactgcgtgccaattggaattcttccagaccgattactatccaacagattcaacaaggacagacaatcaattttagctagagaaggaggaa |
154 |
Q |
| |
|
||||||||||||||||| | |||||||||| ||||||| | || |||| ||| |||||||| ||| || | || ||||| ||||||||||||||||| |
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|
| T |
35142805 |
aaactctgcaactgcgtactaattggaatttttccagataggttgttatcggacacattcaacatggaaaggcgataaatttgagctagagaaggaggaa |
35142904 |
T |
|
| Q |
155 |
tcaaaccagagaaatggtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttgaagtaatttctccattcaaattgttgtttgataa |
254 |
Q |
| |
|
| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||| ||||||| |
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|
| T |
35142905 |
ttaaaccagagaaattgtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctctgaagtaatttccccagtcaaattgttgcttgataa |
35143004 |
T |
|
| Q |
255 |
attcaacaacaccaa |
269 |
Q |
| |
|
|||||| ||||||| |
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|
| T |
35143005 |
attcaatgacaccaa |
35143019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 21 - 269
Target Start/End: Complemental strand, 37139731 - 37139483
Alignment:
| Q |
21 |
aagatcaacattcccttcataatttgaggcattaaaactctgcaactgcgtgccaattggaattcttccagaccgattactatccaacagattcaacaag |
120 |
Q |
| |
|
|||||||||||| |||| |||| |||| |||| |||||||| ||||||||||||||||||||||||||||| |||| |||| | |||||||||| | |
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|
| T |
37139731 |
aagatcaacattgccttgataacttgaagcatcgaaactctgtaactgcgtgccaattggaattcttccagagagattgttatcagatagattcaacacg |
37139632 |
T |
|
| Q |
121 |
gacagacaatcaattttagctagagaaggaggaatcaaaccagagaaatggtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttg |
220 |
Q |
| |
|
||||| | |||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||||||| | ||||||||| |||||||||||||||| | |
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|
| T |
37139631 |
gacaggcgatcaatttgagctagagtaggaggaattggaccagagaaatggtttcttgacaagtcaagagaatcaagtgatattaaccttccaatcttcg |
37139532 |
T |
|
| Q |
221 |
aagtaatttctccattcaaattgttgtttgataaattcaacaacaccaa |
269 |
Q |
| |
|
||| ||||||||| |||| |||||| |||||||||||| ||||||| |
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|
| T |
37139531 |
aaggaatttctcctgtcaacttgttgcatgataaattcaatgacaccaa |
37139483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 21 - 269
Target Start/End: Original strand, 3022483 - 3022731
Alignment:
| Q |
21 |
aagatcaacattcccttcataatttgaggcattaaaactctgcaactgcgtgccaattggaattcttccagaccgattactatccaacagattcaacaag |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||| | ||||| |||||||||||||| |
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|
| T |
3022483 |
aagatcaacattcccttcataatttgaggcattgaaactctgcagctgcgtgccaattggaattcttccagagagataattatccgacagattcaacaag |
3022582 |
T |
|
| Q |
121 |
gacagacaatcaattttagctagagaaggaggaatcaaaccagagaaatggtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttg |
220 |
Q |
| |
|
|||| | ||| |||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3022583 |
gacaagcgatctatttgagctagagaaggtggaatcaaaccagagaaatggtttcttgacaagtcaagaaattcaagtgatgttaaccttccaatctttg |
3022682 |
T |
|
| Q |
221 |
aagtaatttctccattcaaattgttgtttgataaattcaacaacaccaa |
269 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3022683 |
aagtaatttttccattcaaattgttgtttgataaattcaacgacaccaa |
3022731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 11242543 - 11242620
Alignment:
| Q |
21 |
aagatcaacattcccttcataatttgaggcattaaaactctgcaactgcgtgccaattggaattcttccagaccgatt |
98 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| | ||||||||||||||| ||| |||||||||||||||||| |||| |
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|
| T |
11242543 |
aagatcaacatttccttcataacttgaggcgtcgaaactctgcaactgccagcctattggaattcttccagacagatt |
11242620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 13863372 - 13863314
Alignment:
| Q |
171 |
gtttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttgaagtaattt |
229 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
13863372 |
gttttgtgacaaatcaagaaattcaagtgatgttaaccttccgatatttgaaggaattt |
13863314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 13911386 - 13911443
Alignment:
| Q |
172 |
tttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttgaagtaattt |
229 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||| |||| | ||||||| ||||| |
|
|
| T |
13911386 |
tttcgtgacaaatcaagaaagtcaagtgatgttaactttccgaaatttgaaggaattt |
13911443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 14024805 - 14024862
Alignment:
| Q |
172 |
tttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttgaagtaattt |
229 |
Q |
| |
|
||||||||||| |||||||| ||||||||| ||||| ||||||| |||||| ||||| |
|
|
| T |
14024805 |
tttcgtgacaaatcaagaaagtcaagtgatattaactttccaattcttgaaggaattt |
14024862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 229
Target Start/End: Original strand, 14110000 - 14110057
Alignment:
| Q |
172 |
tttcgtgacaagtcaagaaattcaagtgatgttaaccttccaatctttgaagtaattt |
229 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||| ||||||| ||||||| ||||| |
|
|
| T |
14110000 |
tttcgtgacaaatcaagaaagtcaagtgatgttagatttccaatatttgaaggaattt |
14110057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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