View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3306_1D_high_16 (Length: 270)
Name: NF3306_1D_high_16
Description: NF3306_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3306_1D_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 2756841 - 2756976
Alignment:
| Q |
1 |
aagagaacgttccaccgcgaatgaaacagcgacgatgacagtgcaaacaggagcaacaacccatgtaggtgtaaattgcaaatctcttccttcttcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756841 |
aagagaacgttccaccgcgaatgaaacagcgacgatgacagtgcaaacaagagcaacaacccatgtaggtgtaaattgcaaatctcttccttcttcagct |
2756940 |
T |
|
| Q |
101 |
tctcctccaccatgacccatgttgcagttgtgttac |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
2756941 |
tctcctccaccatgacccatgttgcagttgtgttac |
2756976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 173 - 254
Target Start/End: Original strand, 2756974 - 2757055
Alignment:
| Q |
173 |
tactctttgttgtgttttatgttacaactgtgacatgggacataaaaaacaacaactactgcactatttcttgttctgatgt |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2756974 |
tactctttgttgtgttttatgttacaactgcaacatgggacataaaaaacaacaactactgcactatttcttgttctaatgt |
2757055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 168
Target Start/End: Original strand, 2748792 - 2748944
Alignment:
| Q |
17 |
gcgaatgaaacagcgac-gatgacagtgcaaacaggagcaacaacccatgtaggtgtaaattgcaaatctcttccttcttcagcttctcctccaccatga |
115 |
Q |
| |
|
||||||||||| ||||| |||||| |||||||| | ||||||| ||||||||| | | |||||||||| |||||||||| ||| ||||||||||||| |
|
|
| T |
2748792 |
gcgaatgaaactgcgaccgatgacgctgcaaacaagggcaacaatccatgtaggagcatattgcaaatcgggtccttcttcaacttgtcctccaccatga |
2748891 |
T |
|
| Q |
116 |
cccatgttgcagttgtgttacacaatgtttgatttgaacaacgttaacttact |
168 |
Q |
| |
|
||||||||| | ||||||| ||| |||||||||||||||| |||||||||| |
|
|
| T |
2748892 |
cccatgttgtaactgtgttaaacagtgtttgatttgaacaatattaacttact |
2748944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University